miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16312 5' -57.6 NC_004084.1 + 47402 0.66 0.626242
Target:  5'- uCCAGG--GCGCGACgacgaAGCCgaAGGACg -3'
miRNA:   3'- cGGUCUgcUGCGCUGag---UCGG--UCCUG- -5'
16312 5' -57.6 NC_004084.1 + 22403 0.66 0.626242
Target:  5'- aCCGGACGAucaCGCuuCUCGGCUccGACg -3'
miRNA:   3'- cGGUCUGCU---GCGcuGAGUCGGucCUG- -5'
16312 5' -57.6 NC_004084.1 + 18118 0.66 0.61546
Target:  5'- gGUCGGG-GAUGUccGGCUCGGCCcGGAUg -3'
miRNA:   3'- -CGGUCUgCUGCG--CUGAGUCGGuCCUG- -5'
16312 5' -57.6 NC_004084.1 + 32049 0.66 0.61546
Target:  5'- aCCAGACGGCGaugGAUUCGGUUGcGGCg -3'
miRNA:   3'- cGGUCUGCUGCg--CUGAGUCGGUcCUG- -5'
16312 5' -57.6 NC_004084.1 + 56630 0.66 0.614383
Target:  5'- cGCCGGAU--CGUGGCUCAgaacgaccaccucGCCAGGcCc -3'
miRNA:   3'- -CGGUCUGcuGCGCUGAGU-------------CGGUCCuG- -5'
16312 5' -57.6 NC_004084.1 + 8935 0.66 0.604693
Target:  5'- uCCGGAUGACGCcgacGACUC--CgAGGACa -3'
miRNA:   3'- cGGUCUGCUGCG----CUGAGucGgUCCUG- -5'
16312 5' -57.6 NC_004084.1 + 49955 0.66 0.604693
Target:  5'- gGCCAGaACGAacaCGGCUCGGCgAcucgucucgcGGACg -3'
miRNA:   3'- -CGGUC-UGCUgc-GCUGAGUCGgU----------CCUG- -5'
16312 5' -57.6 NC_004084.1 + 8318 0.66 0.604693
Target:  5'- uCCAGACGGCGuCGGCgcggaugaucCAGCCGGc-- -3'
miRNA:   3'- cGGUCUGCUGC-GCUGa---------GUCGGUCcug -5'
16312 5' -57.6 NC_004084.1 + 27352 0.66 0.604693
Target:  5'- gGCCGGACGACGU--CUCAGCgCAu--- -3'
miRNA:   3'- -CGGUCUGCUGCGcuGAGUCG-GUccug -5'
16312 5' -57.6 NC_004084.1 + 8745 0.66 0.603618
Target:  5'- aCCgAGACGACGgaccaccCGGCuUCAGCCGGuACg -3'
miRNA:   3'- cGG-UCUGCUGC-------GCUG-AGUCGGUCcUG- -5'
16312 5' -57.6 NC_004084.1 + 48087 0.66 0.593948
Target:  5'- gGCUagaAGACGAacCGCuGACcgUCAGUgAGGACg -3'
miRNA:   3'- -CGG---UCUGCU--GCG-CUG--AGUCGgUCCUG- -5'
16312 5' -57.6 NC_004084.1 + 44 0.66 0.593948
Target:  5'- cGCCGu-CGGC-CGAUUUcugAGCCGGGGCg -3'
miRNA:   3'- -CGGUcuGCUGcGCUGAG---UCGGUCCUG- -5'
16312 5' -57.6 NC_004084.1 + 50634 0.67 0.575758
Target:  5'- gGUCAGAgcguucuuuucagUGAUGCGACUCAGgucguuguugaugguUCGGGAUg -3'
miRNA:   3'- -CGGUCU-------------GCUGCGCUGAGUC---------------GGUCCUG- -5'
16312 5' -57.6 NC_004084.1 + 51926 0.67 0.572561
Target:  5'- uCCAGuuCGACaCGuucGCUCAGCCGGG-Cg -3'
miRNA:   3'- cGGUCu-GCUGcGC---UGAGUCGGUCCuG- -5'
16312 5' -57.6 NC_004084.1 + 23587 0.67 0.572561
Target:  5'- ---cGACGACGuCGuGCUCcGCCGGGAa -3'
miRNA:   3'- cgguCUGCUGC-GC-UGAGuCGGUCCUg -5'
16312 5' -57.6 NC_004084.1 + 1586 0.67 0.572561
Target:  5'- uCCAgGACGACGUcGCcCGGCUGGGAg -3'
miRNA:   3'- cGGU-CUGCUGCGcUGaGUCGGUCCUg -5'
16312 5' -57.6 NC_004084.1 + 35692 0.67 0.572561
Target:  5'- cGCUGGGCGGacuuCGuCGGgUCGcucGCCGGGACg -3'
miRNA:   3'- -CGGUCUGCU----GC-GCUgAGU---CGGUCCUG- -5'
16312 5' -57.6 NC_004084.1 + 41776 0.67 0.561933
Target:  5'- cCCGGACGACGuCGACga--CgAGGGCg -3'
miRNA:   3'- cGGUCUGCUGC-GCUGagucGgUCCUG- -5'
16312 5' -57.6 NC_004084.1 + 16945 0.67 0.561933
Target:  5'- cGgCGGGCGuCGCGACgUCGggucuucgagcGCCuGGACg -3'
miRNA:   3'- -CgGUCUGCuGCGCUG-AGU-----------CGGuCCUG- -5'
16312 5' -57.6 NC_004084.1 + 54564 0.67 0.55136
Target:  5'- aCCgaGGGCGA-GCuGACUCAGC-AGGACu -3'
miRNA:   3'- cGG--UCUGCUgCG-CUGAGUCGgUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.