miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16313 3' -54 NC_004084.1 + 57622 0.66 0.841828
Target:  5'- uUCGCGcuucguCUCGaGGUCGcGCGUCGc-- -3'
miRNA:   3'- -AGCGCuu----GAGCaUCAGC-CGCAGCucu -5'
16313 3' -54 NC_004084.1 + 11213 0.66 0.841828
Target:  5'- -aGCGGACggGUGaUCGGUGgccUCGAGAa -3'
miRNA:   3'- agCGCUUGagCAUcAGCCGC---AGCUCU- -5'
16313 3' -54 NC_004084.1 + 48585 0.66 0.841828
Target:  5'- cUCGcCGAcCUCGUAGUgcUGGa-UCGAGAu -3'
miRNA:   3'- -AGC-GCUuGAGCAUCA--GCCgcAGCUCU- -5'
16313 3' -54 NC_004084.1 + 54061 0.66 0.833072
Target:  5'- -aGCGAACUCcuuccgcuGUuccUCGGCGUCGguGGAg -3'
miRNA:   3'- agCGCUUGAG--------CAuc-AGCCGCAGC--UCU- -5'
16313 3' -54 NC_004084.1 + 10719 0.66 0.824108
Target:  5'- uUCGCucGGCUCGgGGUCGGUuuccgGUUGGGGa -3'
miRNA:   3'- -AGCGc-UUGAGCaUCAGCCG-----CAGCUCU- -5'
16313 3' -54 NC_004084.1 + 53246 0.66 0.824108
Target:  5'- -aGCGGGCggUCGUcGaCGGCGaCGAGAu -3'
miRNA:   3'- agCGCUUG--AGCAuCaGCCGCaGCUCU- -5'
16313 3' -54 NC_004084.1 + 13666 0.66 0.823201
Target:  5'- uUCGCcAACcuggagcaggccgUCGUAGaUGGCGUCGAuGAg -3'
miRNA:   3'- -AGCGcUUG-------------AGCAUCaGCCGCAGCU-CU- -5'
16313 3' -54 NC_004084.1 + 50249 0.66 0.814946
Target:  5'- cUGCGucCUCGUcgccGUUGGCGgCGAGGu -3'
miRNA:   3'- aGCGCuuGAGCAu---CAGCCGCaGCUCU- -5'
16313 3' -54 NC_004084.1 + 29449 0.66 0.805596
Target:  5'- cCGCGAACgCGgcGUgGGCG-CGAu- -3'
miRNA:   3'- aGCGCUUGaGCauCAgCCGCaGCUcu -5'
16313 3' -54 NC_004084.1 + 6259 0.67 0.796067
Target:  5'- uUCGuCGA---CGUGGUCGGCGUCcauGAu -3'
miRNA:   3'- -AGC-GCUugaGCAUCAGCCGCAGcu-CU- -5'
16313 3' -54 NC_004084.1 + 18630 0.67 0.786369
Target:  5'- gUCGcCGAGuuggccgacCUCGUcGccgucuUCGGCGUCGGGAu -3'
miRNA:   3'- -AGC-GCUU---------GAGCAuC------AGCCGCAGCUCU- -5'
16313 3' -54 NC_004084.1 + 4195 0.67 0.786369
Target:  5'- -aGUgGAACUUGUGGUCGGUGUUa--- -3'
miRNA:   3'- agCG-CUUGAGCAUCAGCCGCAGcucu -5'
16313 3' -54 NC_004084.1 + 56114 0.67 0.766513
Target:  5'- cUCGUcGACgUCGUGcgccgcagugucGUCGGCGUCGAc- -3'
miRNA:   3'- -AGCGcUUG-AGCAU------------CAGCCGCAGCUcu -5'
16313 3' -54 NC_004084.1 + 51211 0.67 0.756375
Target:  5'- gCGCGGGCUacugggCGUGGU--GCGUCGAGc -3'
miRNA:   3'- aGCGCUUGA------GCAUCAgcCGCAGCUCu -5'
16313 3' -54 NC_004084.1 + 21909 0.67 0.755354
Target:  5'- cCGCGGACUCGUuucgaucggccccAGUaguccCGGUugaagugcggGUCGAGAu -3'
miRNA:   3'- aGCGCUUGAGCA-------------UCA-----GCCG----------CAGCUCU- -5'
16313 3' -54 NC_004084.1 + 10250 0.67 0.746113
Target:  5'- -gGUGAG-UCGcGGUCGGCGUCcGGAu -3'
miRNA:   3'- agCGCUUgAGCaUCAGCCGCAGcUCU- -5'
16313 3' -54 NC_004084.1 + 29184 0.68 0.735738
Target:  5'- -aGCgGAACUCGcccuGcUCGGCGUCGAu- -3'
miRNA:   3'- agCG-CUUGAGCau--C-AGCCGCAGCUcu -5'
16313 3' -54 NC_004084.1 + 53951 0.68 0.735738
Target:  5'- uUCGCcagcucGAACUCGaucguccAGUCGggcGCGUCGAGGc -3'
miRNA:   3'- -AGCG------CUUGAGCa------UCAGC---CGCAGCUCU- -5'
16313 3' -54 NC_004084.1 + 11149 0.68 0.735738
Target:  5'- gUCGuCGAcCUCGUAGUaGGCGccggCGAGc -3'
miRNA:   3'- -AGC-GCUuGAGCAUCAgCCGCa---GCUCu -5'
16313 3' -54 NC_004084.1 + 54788 0.68 0.734694
Target:  5'- aUCGUGAGCcagccgaucgccUCGUAGUCGGUccaggccGUCuGGAg -3'
miRNA:   3'- -AGCGCUUG------------AGCAUCAGCCG-------CAGcUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.