miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16313 3' -54 NC_004084.1 + 27795 1.1 0.00154
Target:  5'- gUCGCGAACUCGUAGUCGGCGUCGAGAa -3'
miRNA:   3'- -AGCGCUUGAGCAUCAGCCGCAGCUCU- -5'
16313 3' -54 NC_004084.1 + 958 0.74 0.384658
Target:  5'- gUCGCGGGCcaucUCGcGGUCGGUGUCGcuGAg -3'
miRNA:   3'- -AGCGCUUG----AGCaUCAGCCGCAGCu-CU- -5'
16313 3' -54 NC_004084.1 + 49316 0.72 0.479617
Target:  5'- gCGUGAGCUCGUcgacaucgcccGGUCGGCGUaccgCGGcGAu -3'
miRNA:   3'- aGCGCUUGAGCA-----------UCAGCCGCA----GCU-CU- -5'
16313 3' -54 NC_004084.1 + 56931 0.72 0.479617
Target:  5'- -gGCGGACuUCGUAGUCGuCGUCGGc- -3'
miRNA:   3'- agCGCUUG-AGCAUCAGCcGCAGCUcu -5'
16313 3' -54 NC_004084.1 + 19102 0.72 0.499977
Target:  5'- aCGCGAugUCGUAGuccucgcccucUCGGUGcUCGAcGAu -3'
miRNA:   3'- aGCGCUugAGCAUC-----------AGCCGC-AGCU-CU- -5'
16313 3' -54 NC_004084.1 + 39288 0.71 0.552408
Target:  5'- gUCGCGGACUCGaucGUCGaGCacCGAGAg -3'
miRNA:   3'- -AGCGCUUGAGCau-CAGC-CGcaGCUCU- -5'
16313 3' -54 NC_004084.1 + 46173 0.7 0.573861
Target:  5'- cCGCGAACUUGcccagcUGGUaGGCGgCGAGAu -3'
miRNA:   3'- aGCGCUUGAGC------AUCAgCCGCaGCUCU- -5'
16313 3' -54 NC_004084.1 + 37051 0.7 0.573861
Target:  5'- gUCGuCGAugUCGauguucUCGGUGUCGAGGu -3'
miRNA:   3'- -AGC-GCUugAGCauc---AGCCGCAGCUCU- -5'
16313 3' -54 NC_004084.1 + 21588 0.7 0.613995
Target:  5'- uUCGCG-GCUCGUucgaUCGGCGuucgucgacgcucgUCGAGAa -3'
miRNA:   3'- -AGCGCuUGAGCAuc--AGCCGC--------------AGCUCU- -5'
16313 3' -54 NC_004084.1 + 45462 0.69 0.637987
Target:  5'- cCGCGAGaucgaagccgagcCUCGU--UCGGCGUCGAu- -3'
miRNA:   3'- aGCGCUU-------------GAGCAucAGCCGCAGCUcu -5'
16313 3' -54 NC_004084.1 + 11075 0.69 0.639077
Target:  5'- cCGaCGAacauguGCUUGaGGUCGGCGaCGAGAu -3'
miRNA:   3'- aGC-GCU------UGAGCaUCAGCCGCaGCUCU- -5'
16313 3' -54 NC_004084.1 + 16407 0.69 0.649979
Target:  5'- cUCGCGAcggccACUCGagcaaAGaCGGCGUCGAu- -3'
miRNA:   3'- -AGCGCU-----UGAGCa----UCaGCCGCAGCUcu -5'
16313 3' -54 NC_004084.1 + 6892 0.69 0.660865
Target:  5'- aCGCGAucgaaauggcGCUCG-AGUCGGaCGuagacuUCGAGAc -3'
miRNA:   3'- aGCGCU----------UGAGCaUCAGCC-GC------AGCUCU- -5'
16313 3' -54 NC_004084.1 + 54584 0.69 0.671725
Target:  5'- gUG-GAGC-CGUcGUCGGCGUCGAcGAa -3'
miRNA:   3'- aGCgCUUGaGCAuCAGCCGCAGCU-CU- -5'
16313 3' -54 NC_004084.1 + 22466 0.69 0.671725
Target:  5'- cUCGCGAcgGCUgCGUGGU-GGCGgcuccaguUCGGGAc -3'
miRNA:   3'- -AGCGCU--UGA-GCAUCAgCCGC--------AGCUCU- -5'
16313 3' -54 NC_004084.1 + 49805 0.68 0.697619
Target:  5'- aUCGCGAAgUCGUcgucgccgcgcaugaAGUaccgGGCGUgGAGGu -3'
miRNA:   3'- -AGCGCUUgAGCA---------------UCAg---CCGCAgCUCU- -5'
16313 3' -54 NC_004084.1 + 52040 0.68 0.714691
Target:  5'- -aGCGAGCg-GUcuaCGGCGUCGGGAu -3'
miRNA:   3'- agCGCUUGagCAucaGCCGCAGCUCU- -5'
16313 3' -54 NC_004084.1 + 50160 0.68 0.72526
Target:  5'- gUCGagGAugUCGUcAG-CGGCGUCGAu- -3'
miRNA:   3'- -AGCg-CUugAGCA-UCaGCCGCAGCUcu -5'
16313 3' -54 NC_004084.1 + 15631 0.68 0.72526
Target:  5'- aCGauggaaGAACUcCGgcaucUCGGCGUCGAGAc -3'
miRNA:   3'- aGCg-----CUUGA-GCauc--AGCCGCAGCUCU- -5'
16313 3' -54 NC_004084.1 + 54788 0.68 0.734694
Target:  5'- aUCGUGAGCcagccgaucgccUCGUAGUCGGUccaggccGUCuGGAg -3'
miRNA:   3'- -AGCGCUUG------------AGCAUCAGCCG-------CAGcUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.