Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16313 | 3' | -54 | NC_004084.1 | + | 50160 | 0.68 | 0.72526 |
Target: 5'- gUCGagGAugUCGUcAG-CGGCGUCGAu- -3' miRNA: 3'- -AGCg-CUugAGCA-UCaGCCGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 15631 | 0.68 | 0.72526 |
Target: 5'- aCGauggaaGAACUcCGgcaucUCGGCGUCGAGAc -3' miRNA: 3'- aGCg-----CUUGA-GCauc--AGCCGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 52040 | 0.68 | 0.714691 |
Target: 5'- -aGCGAGCg-GUcuaCGGCGUCGGGAu -3' miRNA: 3'- agCGCUUGagCAucaGCCGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 49805 | 0.68 | 0.697619 |
Target: 5'- aUCGCGAAgUCGUcgucgccgcgcaugaAGUaccgGGCGUgGAGGu -3' miRNA: 3'- -AGCGCUUgAGCA---------------UCAg---CCGCAgCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 54584 | 0.69 | 0.671725 |
Target: 5'- gUG-GAGC-CGUcGUCGGCGUCGAcGAa -3' miRNA: 3'- aGCgCUUGaGCAuCAGCCGCAGCU-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 22466 | 0.69 | 0.671725 |
Target: 5'- cUCGCGAcgGCUgCGUGGU-GGCGgcuccaguUCGGGAc -3' miRNA: 3'- -AGCGCU--UGA-GCAUCAgCCGC--------AGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 6892 | 0.69 | 0.660865 |
Target: 5'- aCGCGAucgaaauggcGCUCG-AGUCGGaCGuagacuUCGAGAc -3' miRNA: 3'- aGCGCU----------UGAGCaUCAGCC-GC------AGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 16407 | 0.69 | 0.649979 |
Target: 5'- cUCGCGAcggccACUCGagcaaAGaCGGCGUCGAu- -3' miRNA: 3'- -AGCGCU-----UGAGCa----UCaGCCGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 11075 | 0.69 | 0.639077 |
Target: 5'- cCGaCGAacauguGCUUGaGGUCGGCGaCGAGAu -3' miRNA: 3'- aGC-GCU------UGAGCaUCAGCCGCaGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 45462 | 0.69 | 0.637987 |
Target: 5'- cCGCGAGaucgaagccgagcCUCGU--UCGGCGUCGAu- -3' miRNA: 3'- aGCGCUU-------------GAGCAucAGCCGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 21588 | 0.7 | 0.613995 |
Target: 5'- uUCGCG-GCUCGUucgaUCGGCGuucgucgacgcucgUCGAGAa -3' miRNA: 3'- -AGCGCuUGAGCAuc--AGCCGC--------------AGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 46173 | 0.7 | 0.573861 |
Target: 5'- cCGCGAACUUGcccagcUGGUaGGCGgCGAGAu -3' miRNA: 3'- aGCGCUUGAGC------AUCAgCCGCaGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 37051 | 0.7 | 0.573861 |
Target: 5'- gUCGuCGAugUCGauguucUCGGUGUCGAGGu -3' miRNA: 3'- -AGC-GCUugAGCauc---AGCCGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 39288 | 0.71 | 0.552408 |
Target: 5'- gUCGCGGACUCGaucGUCGaGCacCGAGAg -3' miRNA: 3'- -AGCGCUUGAGCau-CAGC-CGcaGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 19102 | 0.72 | 0.499977 |
Target: 5'- aCGCGAugUCGUAGuccucgcccucUCGGUGcUCGAcGAu -3' miRNA: 3'- aGCGCUugAGCAUC-----------AGCCGC-AGCU-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 56931 | 0.72 | 0.479617 |
Target: 5'- -gGCGGACuUCGUAGUCGuCGUCGGc- -3' miRNA: 3'- agCGCUUG-AGCAUCAGCcGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 49316 | 0.72 | 0.479617 |
Target: 5'- gCGUGAGCUCGUcgacaucgcccGGUCGGCGUaccgCGGcGAu -3' miRNA: 3'- aGCGCUUGAGCA-----------UCAGCCGCA----GCU-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 958 | 0.74 | 0.384658 |
Target: 5'- gUCGCGGGCcaucUCGcGGUCGGUGUCGcuGAg -3' miRNA: 3'- -AGCGCUUG----AGCaUCAGCCGCAGCu-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 27795 | 1.1 | 0.00154 |
Target: 5'- gUCGCGAACUCGUAGUCGGCGUCGAGAa -3' miRNA: 3'- -AGCGCUUGAGCAUCAGCCGCAGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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