Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16313 | 3' | -54 | NC_004084.1 | + | 958 | 0.74 | 0.384658 |
Target: 5'- gUCGCGGGCcaucUCGcGGUCGGUGUCGcuGAg -3' miRNA: 3'- -AGCGCUUG----AGCaUCAGCCGCAGCu-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 4195 | 0.67 | 0.786369 |
Target: 5'- -aGUgGAACUUGUGGUCGGUGUUa--- -3' miRNA: 3'- agCG-CUUGAGCAUCAGCCGCAGcucu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 6259 | 0.67 | 0.796067 |
Target: 5'- uUCGuCGA---CGUGGUCGGCGUCcauGAu -3' miRNA: 3'- -AGC-GCUugaGCAUCAGCCGCAGcu-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 6892 | 0.69 | 0.660865 |
Target: 5'- aCGCGAucgaaauggcGCUCG-AGUCGGaCGuagacuUCGAGAc -3' miRNA: 3'- aGCGCU----------UGAGCaUCAGCC-GC------AGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 10250 | 0.67 | 0.746113 |
Target: 5'- -gGUGAG-UCGcGGUCGGCGUCcGGAu -3' miRNA: 3'- agCGCUUgAGCaUCAGCCGCAGcUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 10719 | 0.66 | 0.824108 |
Target: 5'- uUCGCucGGCUCGgGGUCGGUuuccgGUUGGGGa -3' miRNA: 3'- -AGCGc-UUGAGCaUCAGCCG-----CAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 11075 | 0.69 | 0.639077 |
Target: 5'- cCGaCGAacauguGCUUGaGGUCGGCGaCGAGAu -3' miRNA: 3'- aGC-GCU------UGAGCaUCAGCCGCaGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 11149 | 0.68 | 0.735738 |
Target: 5'- gUCGuCGAcCUCGUAGUaGGCGccggCGAGc -3' miRNA: 3'- -AGC-GCUuGAGCAUCAgCCGCa---GCUCu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 11213 | 0.66 | 0.841828 |
Target: 5'- -aGCGGACggGUGaUCGGUGgccUCGAGAa -3' miRNA: 3'- agCGCUUGagCAUcAGCCGC---AGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 13666 | 0.66 | 0.823201 |
Target: 5'- uUCGCcAACcuggagcaggccgUCGUAGaUGGCGUCGAuGAg -3' miRNA: 3'- -AGCGcUUG-------------AGCAUCaGCCGCAGCU-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 15631 | 0.68 | 0.72526 |
Target: 5'- aCGauggaaGAACUcCGgcaucUCGGCGUCGAGAc -3' miRNA: 3'- aGCg-----CUUGA-GCauc--AGCCGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 16407 | 0.69 | 0.649979 |
Target: 5'- cUCGCGAcggccACUCGagcaaAGaCGGCGUCGAu- -3' miRNA: 3'- -AGCGCU-----UGAGCa----UCaGCCGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 18630 | 0.67 | 0.786369 |
Target: 5'- gUCGcCGAGuuggccgacCUCGUcGccgucuUCGGCGUCGGGAu -3' miRNA: 3'- -AGC-GCUU---------GAGCAuC------AGCCGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 19102 | 0.72 | 0.499977 |
Target: 5'- aCGCGAugUCGUAGuccucgcccucUCGGUGcUCGAcGAu -3' miRNA: 3'- aGCGCUugAGCAUC-----------AGCCGC-AGCU-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 21588 | 0.7 | 0.613995 |
Target: 5'- uUCGCG-GCUCGUucgaUCGGCGuucgucgacgcucgUCGAGAa -3' miRNA: 3'- -AGCGCuUGAGCAuc--AGCCGC--------------AGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 21909 | 0.67 | 0.755354 |
Target: 5'- cCGCGGACUCGUuucgaucggccccAGUaguccCGGUugaagugcggGUCGAGAu -3' miRNA: 3'- aGCGCUUGAGCA-------------UCA-----GCCG----------CAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 22466 | 0.69 | 0.671725 |
Target: 5'- cUCGCGAcgGCUgCGUGGU-GGCGgcuccaguUCGGGAc -3' miRNA: 3'- -AGCGCU--UGA-GCAUCAgCCGC--------AGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 27795 | 1.1 | 0.00154 |
Target: 5'- gUCGCGAACUCGUAGUCGGCGUCGAGAa -3' miRNA: 3'- -AGCGCUUGAGCAUCAGCCGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 29184 | 0.68 | 0.735738 |
Target: 5'- -aGCgGAACUCGcccuGcUCGGCGUCGAu- -3' miRNA: 3'- agCG-CUUGAGCau--C-AGCCGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 29449 | 0.66 | 0.805596 |
Target: 5'- cCGCGAACgCGgcGUgGGCG-CGAu- -3' miRNA: 3'- aGCGCUUGaGCauCAgCCGCaGCUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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