Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16313 | 3' | -54 | NC_004084.1 | + | 57622 | 0.66 | 0.841828 |
Target: 5'- uUCGCGcuucguCUCGaGGUCGcGCGUCGc-- -3' miRNA: 3'- -AGCGCuu----GAGCaUCAGC-CGCAGCucu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 56931 | 0.72 | 0.479617 |
Target: 5'- -gGCGGACuUCGUAGUCGuCGUCGGc- -3' miRNA: 3'- agCGCUUG-AGCAUCAGCcGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 56114 | 0.67 | 0.766513 |
Target: 5'- cUCGUcGACgUCGUGcgccgcagugucGUCGGCGUCGAc- -3' miRNA: 3'- -AGCGcUUG-AGCAU------------CAGCCGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 54788 | 0.68 | 0.734694 |
Target: 5'- aUCGUGAGCcagccgaucgccUCGUAGUCGGUccaggccGUCuGGAg -3' miRNA: 3'- -AGCGCUUG------------AGCAUCAGCCG-------CAGcUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 54584 | 0.69 | 0.671725 |
Target: 5'- gUG-GAGC-CGUcGUCGGCGUCGAcGAa -3' miRNA: 3'- aGCgCUUGaGCAuCAGCCGCAGCU-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 54061 | 0.66 | 0.833072 |
Target: 5'- -aGCGAACUCcuuccgcuGUuccUCGGCGUCGguGGAg -3' miRNA: 3'- agCGCUUGAG--------CAuc-AGCCGCAGC--UCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 53951 | 0.68 | 0.735738 |
Target: 5'- uUCGCcagcucGAACUCGaucguccAGUCGggcGCGUCGAGGc -3' miRNA: 3'- -AGCG------CUUGAGCa------UCAGC---CGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 53246 | 0.66 | 0.824108 |
Target: 5'- -aGCGGGCggUCGUcGaCGGCGaCGAGAu -3' miRNA: 3'- agCGCUUG--AGCAuCaGCCGCaGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 52040 | 0.68 | 0.714691 |
Target: 5'- -aGCGAGCg-GUcuaCGGCGUCGGGAu -3' miRNA: 3'- agCGCUUGagCAucaGCCGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 51211 | 0.67 | 0.756375 |
Target: 5'- gCGCGGGCUacugggCGUGGU--GCGUCGAGc -3' miRNA: 3'- aGCGCUUGA------GCAUCAgcCGCAGCUCu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 50249 | 0.66 | 0.814946 |
Target: 5'- cUGCGucCUCGUcgccGUUGGCGgCGAGGu -3' miRNA: 3'- aGCGCuuGAGCAu---CAGCCGCaGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 50160 | 0.68 | 0.72526 |
Target: 5'- gUCGagGAugUCGUcAG-CGGCGUCGAu- -3' miRNA: 3'- -AGCg-CUugAGCA-UCaGCCGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 49805 | 0.68 | 0.697619 |
Target: 5'- aUCGCGAAgUCGUcgucgccgcgcaugaAGUaccgGGCGUgGAGGu -3' miRNA: 3'- -AGCGCUUgAGCA---------------UCAg---CCGCAgCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 49316 | 0.72 | 0.479617 |
Target: 5'- gCGUGAGCUCGUcgacaucgcccGGUCGGCGUaccgCGGcGAu -3' miRNA: 3'- aGCGCUUGAGCA-----------UCAGCCGCA----GCU-CU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 48585 | 0.66 | 0.841828 |
Target: 5'- cUCGcCGAcCUCGUAGUgcUGGa-UCGAGAu -3' miRNA: 3'- -AGC-GCUuGAGCAUCA--GCCgcAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 46173 | 0.7 | 0.573861 |
Target: 5'- cCGCGAACUUGcccagcUGGUaGGCGgCGAGAu -3' miRNA: 3'- aGCGCUUGAGC------AUCAgCCGCaGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 45462 | 0.69 | 0.637987 |
Target: 5'- cCGCGAGaucgaagccgagcCUCGU--UCGGCGUCGAu- -3' miRNA: 3'- aGCGCUU-------------GAGCAucAGCCGCAGCUcu -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 39288 | 0.71 | 0.552408 |
Target: 5'- gUCGCGGACUCGaucGUCGaGCacCGAGAg -3' miRNA: 3'- -AGCGCUUGAGCau-CAGC-CGcaGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 37051 | 0.7 | 0.573861 |
Target: 5'- gUCGuCGAugUCGauguucUCGGUGUCGAGGu -3' miRNA: 3'- -AGC-GCUugAGCauc---AGCCGCAGCUCU- -5' |
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16313 | 3' | -54 | NC_004084.1 | + | 29449 | 0.66 | 0.805596 |
Target: 5'- cCGCGAACgCGgcGUgGGCG-CGAu- -3' miRNA: 3'- aGCGCUUGaGCauCAgCCGCaGCUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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