miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16313 5' -60.9 NC_004084.1 + 41135 0.66 0.472305
Target:  5'- cCACCgcCGCCaCCGcCUCCaccgaGGgcaUCGCCGAc -3'
miRNA:   3'- -GUGGa-GUGG-GGC-GAGG-----CCa--AGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 2221 0.66 0.472305
Target:  5'- -uCCUCGCCgCuCGCUUCGGccagCGCgGAg -3'
miRNA:   3'- guGGAGUGG-G-GCGAGGCCaa--GCGgCU- -5'
16313 5' -60.9 NC_004084.1 + 40850 0.66 0.462728
Target:  5'- cCugCUCuggugcguCCCaCGCUCCGcugUCGUCGAc -3'
miRNA:   3'- -GugGAGu-------GGG-GCGAGGCca-AGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 4171 0.66 0.462728
Target:  5'- aACCUCGCCgacggcgcugaUCGCUCCGa--CGUCGAg -3'
miRNA:   3'- gUGGAGUGG-----------GGCGAGGCcaaGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 55823 0.66 0.453253
Target:  5'- gACUUCACCUCgGCgucgUCCGGgaUGCCGu -3'
miRNA:   3'- gUGGAGUGGGG-CG----AGGCCaaGCGGCu -5'
16313 5' -60.9 NC_004084.1 + 8144 0.67 0.407541
Target:  5'- aGCCUCGuuUCGC-CUGGUcgUGCCGAc -3'
miRNA:   3'- gUGGAGUggGGCGaGGCCAa-GCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 41247 0.67 0.39875
Target:  5'- uGCCUC-CCUCGcCUUCGacgUCGCCGGc -3'
miRNA:   3'- gUGGAGuGGGGC-GAGGCca-AGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 50000 0.67 0.390081
Target:  5'- cCGCCUCGCCCaugaUCaCGuugUCGCCGAg -3'
miRNA:   3'- -GUGGAGUGGGgcg-AG-GCca-AGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 47107 0.67 0.381536
Target:  5'- cCGCCggucgGCaCCUGCaUCCGGUgcgaCGCCGAg -3'
miRNA:   3'- -GUGGag---UG-GGGCG-AGGCCAa---GCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 5628 0.67 0.381536
Target:  5'- aACCUCcugaaGCagCCGCUCCuGGUucUCGUCGAa -3'
miRNA:   3'- gUGGAG-----UGg-GGCGAGG-CCA--AGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 13952 0.67 0.381536
Target:  5'- aGCCUCAaaCUCGCUCCGGaaCgGUCGAu -3'
miRNA:   3'- gUGGAGUg-GGGCGAGGCCaaG-CGGCU- -5'
16313 5' -60.9 NC_004084.1 + 40753 0.68 0.364826
Target:  5'- aGCgUCGCCCUguGCUCgGGUgUCGCCc- -3'
miRNA:   3'- gUGgAGUGGGG--CGAGgCCA-AGCGGcu -5'
16313 5' -60.9 NC_004084.1 + 17105 0.68 0.356662
Target:  5'- cCGCgCUCGCCgguCCGCUCCaGgaCGUCGAu -3'
miRNA:   3'- -GUG-GAGUGG---GGCGAGGcCaaGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 46490 0.68 0.356662
Target:  5'- -uCCUCGCUggUCGCgacgucgCCGG-UCGCCGAg -3'
miRNA:   3'- guGGAGUGG--GGCGa------GGCCaAGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 51078 0.68 0.332949
Target:  5'- gGCCUgACCCCaCUCUGGggCGUCu- -3'
miRNA:   3'- gUGGAgUGGGGcGAGGCCaaGCGGcu -5'
16313 5' -60.9 NC_004084.1 + 46070 0.68 0.325306
Target:  5'- cCACCUUcgaacgucCCCUGCUCUucaGGaUCGCCGAc -3'
miRNA:   3'- -GUGGAGu-------GGGGCGAGG---CCaAGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 22391 0.68 0.325306
Target:  5'- -uCCUCGuCUCCGUuccuUCCGGUUCGCUu- -3'
miRNA:   3'- guGGAGU-GGGGCG----AGGCCAAGCGGcu -5'
16313 5' -60.9 NC_004084.1 + 8743 0.69 0.294638
Target:  5'- aCACCgagacgacggacCACCCgGCUucagCCGGUaCGCCGAc -3'
miRNA:   3'- -GUGGa-----------GUGGGgCGA----GGCCAaGCGGCU- -5'
16313 5' -60.9 NC_004084.1 + 56653 0.7 0.262402
Target:  5'- cCACCUCgccagGCCCCGCUC-GGUacuUCGgCGGc -3'
miRNA:   3'- -GUGGAG-----UGGGGCGAGgCCA---AGCgGCU- -5'
16313 5' -60.9 NC_004084.1 + 55689 0.7 0.256058
Target:  5'- -uCCUCugCC-GCUCUGGUUCGaCCGc -3'
miRNA:   3'- guGGAGugGGgCGAGGCCAAGC-GGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.