miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16314 5' -56.6 NC_004084.1 + 41963 0.66 0.66887
Target:  5'- cCUGCCggaaCGACGGUgaAGGGGCCgGaucCGGCa -3'
miRNA:   3'- -GAUGGg---GUUGCUA--UCCCUGGgC---GCUG- -5'
16314 5' -56.6 NC_004084.1 + 7373 0.66 0.647265
Target:  5'- -cGCUCCGACGGUGaucccGCCUGCGACc -3'
miRNA:   3'- gaUGGGGUUGCUAUccc--UGGGCGCUG- -5'
16314 5' -56.6 NC_004084.1 + 303 0.67 0.603968
Target:  5'- -gACCgCCGACGAgaacccgaagcAGGGGCgCgGCGACc -3'
miRNA:   3'- gaUGG-GGUUGCUa----------UCCCUG-GgCGCUG- -5'
16314 5' -56.6 NC_004084.1 + 21835 0.67 0.593179
Target:  5'- -gGCgCUgGACGAUgcAGGGAUUgGCGACg -3'
miRNA:   3'- gaUG-GGgUUGCUA--UCCCUGGgCGCUG- -5'
16314 5' -56.6 NC_004084.1 + 16992 0.67 0.582423
Target:  5'- -cGgCCCAgcuuuaguagguACGAUcacagauGGGAUCCGCGACc -3'
miRNA:   3'- gaUgGGGU------------UGCUAu------CCCUGGGCGCUG- -5'
16314 5' -56.6 NC_004084.1 + 39000 0.68 0.529395
Target:  5'- -cACCCCGAuCGAcGGGGAUCa-CGACu -3'
miRNA:   3'- gaUGGGGUU-GCUaUCCCUGGgcGCUG- -5'
16314 5' -56.6 NC_004084.1 + 57310 0.69 0.508666
Target:  5'- cCU-CCUCGACGAgGGGGACgCCuacaaaGCGGCg -3'
miRNA:   3'- -GAuGGGGUUGCUaUCCCUG-GG------CGCUG- -5'
16314 5' -56.6 NC_004084.1 + 45420 0.69 0.508666
Target:  5'- -gGCCUCGACucguucacggguGAUGGGGaugucugacgccGCCCGCGAg -3'
miRNA:   3'- gaUGGGGUUG------------CUAUCCC------------UGGGCGCUg -5'
16314 5' -56.6 NC_004084.1 + 36058 0.69 0.478241
Target:  5'- aUACCCU---GGUGGGGAUacgacgaggaCCGCGACg -3'
miRNA:   3'- gAUGGGGuugCUAUCCCUG----------GGCGCUG- -5'
16314 5' -56.6 NC_004084.1 + 46217 0.69 0.468299
Target:  5'- aCUAUCCCGGggagcCGAUAGGG-CCUGaGACg -3'
miRNA:   3'- -GAUGGGGUU-----GCUAUCCCuGGGCgCUG- -5'
16314 5' -56.6 NC_004084.1 + 24001 0.7 0.44874
Target:  5'- -gGCCUCuuUGAaAGGaGAUCCGCGGCg -3'
miRNA:   3'- gaUGGGGuuGCUaUCC-CUGGGCGCUG- -5'
16314 5' -56.6 NC_004084.1 + 21751 0.7 0.439132
Target:  5'- -aACCCUgGACGGUuccacGGGGAUCgGCGGCa -3'
miRNA:   3'- gaUGGGG-UUGCUA-----UCCCUGGgCGCUG- -5'
16314 5' -56.6 NC_004084.1 + 22480 0.7 0.41103
Target:  5'- -gACCCCGGCGAcgccGGGGACaugcucgugaaCCGCGuCa -3'
miRNA:   3'- gaUGGGGUUGCUa---UCCCUG-----------GGCGCuG- -5'
16314 5' -56.6 NC_004084.1 + 43022 0.73 0.288494
Target:  5'- --uCCCCAACGAgacgcaAGcGGACCCGCGu- -3'
miRNA:   3'- gauGGGGUUGCUa-----UC-CCUGGGCGCug -5'
16314 5' -56.6 NC_004084.1 + 27124 1.08 0.000942
Target:  5'- gCUACCCCAACGAUAGGGACCCGCGACc -3'
miRNA:   3'- -GAUGGGGUUGCUAUCCCUGGGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.