Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16315 | 5' | -47.3 | NC_004084.1 | + | 29370 | 0.66 | 0.990557 |
Target: 5'- cGCCCGGGaucccgcgucccuccUGgaaggUGAUGccgcccucgauGGGCUCCuGCa -3' miRNA: 3'- -CGGGUCU---------------ACaa---ACUAU-----------UCUGAGGuCG- -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 29480 | 0.66 | 0.989988 |
Target: 5'- cGCUCgaGGGUGcggcggUGGUucuccagcuuGGGGCUCCAGCc -3' miRNA: 3'- -CGGG--UCUACaa----ACUA----------UUCUGAGGUCG- -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 49764 | 0.66 | 0.986726 |
Target: 5'- cGCCCAGAcccucgGcgAGGACUaCAGCc -3' miRNA: 3'- -CGGGUCUacaaa-CuaUUCUGAgGUCG- -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 31908 | 0.67 | 0.984816 |
Target: 5'- aCCCucgcGAUGgaUGcgaucUGGGAUUCCAGCu -3' miRNA: 3'- cGGGu---CUACaaACu----AUUCUGAGGUCG- -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 31790 | 0.67 | 0.982704 |
Target: 5'- gGCCgAGugugcgauuagaGUGUUUGAUAAGGuCUgCCgAGCg -3' miRNA: 3'- -CGGgUC------------UACAAACUAUUCU-GA-GG-UCG- -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 17855 | 0.67 | 0.980377 |
Target: 5'- gGCCgAGAUGUcgGucgaaucGGACUCUGGUg -3' miRNA: 3'- -CGGgUCUACAaaCuau----UCUGAGGUCG- -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 4573 | 0.68 | 0.971999 |
Target: 5'- aGUCCGGAUGUUUGc----AUUCCAGg -3' miRNA: 3'- -CGGGUCUACAAACuauucUGAGGUCg -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 41736 | 0.7 | 0.913456 |
Target: 5'- uCCCGGAUGac-GAUcGGGACgacgCCGGCg -3' miRNA: 3'- cGGGUCUACaaaCUA-UUCUGa---GGUCG- -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 1291 | 0.71 | 0.892016 |
Target: 5'- uGCCCGgcucgcucGAUGagUGAUAGGAUcUCAGCa -3' miRNA: 3'- -CGGGU--------CUACaaACUAUUCUGaGGUCG- -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 37645 | 0.71 | 0.876245 |
Target: 5'- gGCCCuuuGAUGUUUGAUAAGG-UCUAu- -3' miRNA: 3'- -CGGGu--CUACAAACUAUUCUgAGGUcg -5' |
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16315 | 5' | -47.3 | NC_004084.1 | + | 26649 | 1.17 | 0.002338 |
Target: 5'- gGCCCAGAUGUUUGAUAAGACUCCAGCg -3' miRNA: 3'- -CGGGUCUACAAACUAUUCUGAGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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