Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16316 | 3' | -56.4 | NC_004084.1 | + | 26028 | 0.76 | 0.208879 |
Target: 5'- gUCGUAGc---CUUCGAGCCCGAGCUCg -3' miRNA: 3'- -AGCAUCuccaGGAGCUUGGGCUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 54747 | 0.66 | 0.710334 |
Target: 5'- aUUGaGGAGuUCCUCGAcGCCa-AGCCCa -3' miRNA: 3'- -AGCaUCUCcAGGAGCU-UGGgcUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 52251 | 0.66 | 0.699813 |
Target: 5'- ----cGAGGUCCaccUgGAGCCCGAucGCCa -3' miRNA: 3'- agcauCUCCAGG---AgCUUGGGCU--CGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 35928 | 0.66 | 0.699813 |
Target: 5'- -aGUGGAcuacGUCC-CGAACUgGAGCCg -3' miRNA: 3'- agCAUCUc---CAGGaGCUUGGgCUCGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 17648 | 0.66 | 0.678592 |
Target: 5'- aUCGUucGAGG-CCUgGGcgacACCCGAGCa- -3' miRNA: 3'- -AGCAu-CUCCaGGAgCU----UGGGCUCGgg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 2432 | 0.67 | 0.666843 |
Target: 5'- aUCGUGGGcGGUgaaucgaCCgUCGAcgagAUCCGAGCCa -3' miRNA: 3'- -AGCAUCU-CCA-------GG-AGCU----UGGGCUCGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 52695 | 0.67 | 0.635724 |
Target: 5'- cCGaucGAGGaCCUCG-GCCCGAGCg- -3' miRNA: 3'- aGCau-CUCCaGGAGCuUGGGCUCGgg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 38081 | 0.67 | 0.614233 |
Target: 5'- cUCGUGauGAGGUCCgu--GCUCuAGCCCg -3' miRNA: 3'- -AGCAU--CUCCAGGagcuUGGGcUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 43910 | 0.68 | 0.603506 |
Target: 5'- ---aAGAGGgCCaCGAACCCGAGUuggCCg -3' miRNA: 3'- agcaUCUCCaGGaGCUUGGGCUCG---GG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 33641 | 0.7 | 0.488707 |
Target: 5'- uUCG-AGaAGGUCUUCGggUuuGAGUUCg -3' miRNA: 3'- -AGCaUC-UCCAGGAGCuuGggCUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 43341 | 0.7 | 0.459097 |
Target: 5'- -aGUGGAcGGU-CUCGAACgCCGAGUCg -3' miRNA: 3'- agCAUCU-CCAgGAGCUUG-GGCUCGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 49711 | 0.71 | 0.43047 |
Target: 5'- cCGaGGAGGUUCUUGcagaacucCCCGAGUCCu -3' miRNA: 3'- aGCaUCUCCAGGAGCuu------GGGCUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 29906 | 0.71 | 0.43047 |
Target: 5'- aCGcAGAGGUgaaCgugCGAGCCCGcgccAGCCCg -3' miRNA: 3'- aGCaUCUCCAg--Ga--GCUUGGGC----UCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 17823 | 0.73 | 0.297228 |
Target: 5'- uUUGaAGAGGUCCgaGAAgCCGAGCUCg -3' miRNA: 3'- -AGCaUCUCCAGGagCUUgGGCUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 56909 | 0.66 | 0.678592 |
Target: 5'- gUGUAGAGGUCCUCGucgggacggcgGACuUCGuAGUCg -3' miRNA: 3'- aGCAUCUCCAGGAGC-----------UUG-GGC-UCGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 18360 | 0.66 | 0.678592 |
Target: 5'- aCGUucgcGGGGUCgacggCUCGGACgUGcAGCCCg -3' miRNA: 3'- aGCAu---CUCCAG-----GAGCUUGgGC-UCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 45400 | 0.66 | 0.678592 |
Target: 5'- gUCGUGaagguguugcucGAGGUCgUCGA--UCGAGCCg -3' miRNA: 3'- -AGCAU------------CUCCAGgAGCUugGGCUCGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 50269 | 0.66 | 0.689228 |
Target: 5'- gCGgcGAGGUCCUCGAcgucugCCGA-CCa -3' miRNA: 3'- aGCauCUCCAGGAGCUug----GGCUcGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 12864 | 0.66 | 0.697701 |
Target: 5'- gCGUAcuccgcuucGAGGUCCUCGcgccaacccauCCCGGcGUCCu -3' miRNA: 3'- aGCAU---------CUCCAGGAGCuu---------GGGCU-CGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 26389 | 1.12 | 0.000622 |
Target: 5'- gUCGUAGAGGUCCUCGAACCCGAGCCCu -3' miRNA: 3'- -AGCAUCUCCAGGAGCUUGGGCUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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