Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16316 | 3' | -56.4 | NC_004084.1 | + | 2376 | 0.68 | 0.592802 |
Target: 5'- gUCGUAGAacuugaccgGGaccUCCUCGAGCUCGAucuccuuggcgGCUCg -3' miRNA: 3'- -AGCAUCU---------CC---AGGAGCUUGGGCU-----------CGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 48687 | 0.68 | 0.592802 |
Target: 5'- cCGUAGuacgacGGGgCCUCGAAUCCGGcgacGUCCu -3' miRNA: 3'- aGCAUC------UCCaGGAGCUUGGGCU----CGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 56840 | 0.68 | 0.582129 |
Target: 5'- gCGc--GGG-CCUCGAGCCuCGGGCCa -3' miRNA: 3'- aGCaucUCCaGGAGCUUGG-GCUCGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 35283 | 0.68 | 0.578935 |
Target: 5'- cUCGgcgcuggGGAGGUCCUCGAucguuucgacggucACCUuuccGGCCUu -3' miRNA: 3'- -AGCa------UCUCCAGGAGCU--------------UGGGc---UCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 8 | 0.68 | 0.571497 |
Target: 5'- -aGUcGGGGGUCUUCGAAgUCGAGgUCg -3' miRNA: 3'- agCA-UCUCCAGGAGCUUgGGCUCgGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 39931 | 0.69 | 0.52951 |
Target: 5'- cUCGcuGAGGUuccacgucgacaCCUCGAACUCGAGCg- -3' miRNA: 3'- -AGCauCUCCA------------GGAGCUUGGGCUCGgg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 16657 | 0.7 | 0.488707 |
Target: 5'- gUCGUccgGGAGGUCCUCGucGCCgGcgucGUCCc -3' miRNA: 3'- -AGCA---UCUCCAGGAGCu-UGGgCu---CGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 33641 | 0.7 | 0.488707 |
Target: 5'- uUCG-AGaAGGUCUUCGggUuuGAGUUCg -3' miRNA: 3'- -AGCaUC-UCCAGGAGCuuGggCUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 43341 | 0.7 | 0.459097 |
Target: 5'- -aGUGGAcGGU-CUCGAACgCCGAGUCg -3' miRNA: 3'- agCAUCU-CCAgGAGCUUG-GGCUCGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 5688 | 0.7 | 0.458127 |
Target: 5'- gUCGUcGAGGUCCgcuggguugaguUCGAggacgucGCUCGGGCCg -3' miRNA: 3'- -AGCAuCUCCAGG------------AGCU-------UGGGCUCGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 8607 | 0.71 | 0.43047 |
Target: 5'- cUCGUcGAGGcugUCCUCGAGgCCGAucugGCCg -3' miRNA: 3'- -AGCAuCUCC---AGGAGCUUgGGCU----CGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 29906 | 0.71 | 0.43047 |
Target: 5'- aCGcAGAGGUgaaCgugCGAGCCCGcgccAGCCCg -3' miRNA: 3'- aGCaUCUCCAg--Ga--GCUUGGGC----UCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 49711 | 0.71 | 0.43047 |
Target: 5'- cCGaGGAGGUUCUUGcagaacucCCCGAGUCCu -3' miRNA: 3'- aGCaUCUCCAGGAGCuu------GGGCUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 1551 | 0.71 | 0.402917 |
Target: 5'- -aGgcGAcGGcCgUCGAGCCgGAGCCCg -3' miRNA: 3'- agCauCU-CCaGgAGCUUGGgCUCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 35773 | 0.71 | 0.393984 |
Target: 5'- cCGUAGAGGU--UCGAGCCgGAGgCgCCg -3' miRNA: 3'- aGCAUCUCCAggAGCUUGGgCUC-G-GG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 815 | 0.72 | 0.351292 |
Target: 5'- aUCGUGGAGGUCCUCG---UCGAuGCUg -3' miRNA: 3'- -AGCAUCUCCAGGAGCuugGGCU-CGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 5008 | 0.72 | 0.350472 |
Target: 5'- cUCGacGAGGUCCUCGAggaguugguagccGCCCGAcgaggGCCg -3' miRNA: 3'- -AGCauCUCCAGGAGCU-------------UGGGCU-----CGGg -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 27656 | 0.72 | 0.343157 |
Target: 5'- cUCGaGGAGGUCgCUCGAcUCCG-GUCCg -3' miRNA: 3'- -AGCaUCUCCAG-GAGCUuGGGCuCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 9874 | 0.73 | 0.304539 |
Target: 5'- gCGacGAGGUUCUUGAACCCu-GCCCg -3' miRNA: 3'- aGCauCUCCAGGAGCUUGGGcuCGGG- -5' |
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16316 | 3' | -56.4 | NC_004084.1 | + | 17823 | 0.73 | 0.297228 |
Target: 5'- uUUGaAGAGGUCCgaGAAgCCGAGCUCg -3' miRNA: 3'- -AGCaUCUCCAGGagCUUgGGCUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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