miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16316 5' -54.9 NC_004084.1 + 16615 0.66 0.805328
Target:  5'- gGCGGGcUCCucgAGGUCGAUCGugacgcccucguCGucGACGu -3'
miRNA:   3'- -CGCCU-AGG---UCCAGCUAGU------------GCucCUGC- -5'
16316 5' -54.9 NC_004084.1 + 23377 0.66 0.805328
Target:  5'- uCGGAUCCGucgCGAgccacuCGAGGACGg -3'
miRNA:   3'- cGCCUAGGUccaGCUagu---GCUCCUGC- -5'
16316 5' -54.9 NC_004084.1 + 14264 0.66 0.795875
Target:  5'- cCGGGaCCAGGUgGAgguccucgucgUCGCGAGcGGCu -3'
miRNA:   3'- cGCCUaGGUCCAgCU-----------AGUGCUC-CUGc -5'
16316 5' -54.9 NC_004084.1 + 15826 0.66 0.795875
Target:  5'- uCGGcUCCuGGUCGuuguagCACGAGuGGCa -3'
miRNA:   3'- cGCCuAGGuCCAGCua----GUGCUC-CUGc -5'
16316 5' -54.9 NC_004084.1 + 2839 0.67 0.70464
Target:  5'- uCGGcGUCCGcGGUgGAUCGC-AGGACa -3'
miRNA:   3'- cGCC-UAGGU-CCAgCUAGUGcUCCUGc -5'
16316 5' -54.9 NC_004084.1 + 2877 0.67 0.70464
Target:  5'- cGCGGccagCCAGcG-CGAUCGCgGAGGAUc -3'
miRNA:   3'- -CGCCua--GGUC-CaGCUAGUG-CUCCUGc -5'
16316 5' -54.9 NC_004084.1 + 17915 0.68 0.694016
Target:  5'- aGCGGGcuggucccaccUgCAGGUCGAUCAggucgucgcguuCGAGGcCGu -3'
miRNA:   3'- -CGCCU-----------AgGUCCAGCUAGU------------GCUCCuGC- -5'
16316 5' -54.9 NC_004084.1 + 40725 0.68 0.683335
Target:  5'- gGCuGGAUCguGGUCGAcUgGCGgaAGGGCa -3'
miRNA:   3'- -CG-CCUAGguCCAGCU-AgUGC--UCCUGc -5'
16316 5' -54.9 NC_004084.1 + 18144 0.68 0.683335
Target:  5'- aUGGAgUCCGGGUCGAUCAgCGcGaGCGu -3'
miRNA:   3'- cGCCU-AGGUCCAGCUAGU-GCuCcUGC- -5'
16316 5' -54.9 NC_004084.1 + 49003 0.68 0.676903
Target:  5'- cGCGcGGUCCGuGUCGAUCGUGAccgacacgacguccuGGACGg -3'
miRNA:   3'- -CGC-CUAGGUcCAGCUAGUGCU---------------CCUGC- -5'
16316 5' -54.9 NC_004084.1 + 50029 0.68 0.655368
Target:  5'- aGCGGGgugUCCcGGUCGGUCAgcguguagugguagcUGAGGAg- -3'
miRNA:   3'- -CGCCU---AGGuCCAGCUAGU---------------GCUCCUgc -5'
16316 5' -54.9 NC_004084.1 + 30425 0.68 0.651048
Target:  5'- gGCGGcgaCGGaagCGAUgGCGAGGACGa -3'
miRNA:   3'- -CGCCuagGUCca-GCUAgUGCUCCUGC- -5'
16316 5' -54.9 NC_004084.1 + 6767 0.68 0.649968
Target:  5'- cGCGGAagggcagUCCgAGGUC--UCgGCGGGGACGu -3'
miRNA:   3'- -CGCCU-------AGG-UCCAGcuAG-UGCUCCUGC- -5'
16316 5' -54.9 NC_004084.1 + 30026 0.69 0.618609
Target:  5'- cGCGccGAUCgAGGUC--UCGCGGGGGCc -3'
miRNA:   3'- -CGC--CUAGgUCCAGcuAGUGCUCCUGc -5'
16316 5' -54.9 NC_004084.1 + 43587 0.7 0.554265
Target:  5'- cGCGGAuccUCCAGuGg-GAUCGCGAGuACGg -3'
miRNA:   3'- -CGCCU---AGGUC-CagCUAGUGCUCcUGC- -5'
16316 5' -54.9 NC_004084.1 + 46836 0.7 0.553206
Target:  5'- uGCGGcgacaccGUUCAGuGUCGAUUccuCGAGGACa -3'
miRNA:   3'- -CGCC-------UAGGUC-CAGCUAGu--GCUCCUGc -5'
16316 5' -54.9 NC_004084.1 + 5681 0.7 0.543706
Target:  5'- aGCGGAggucgucgaggUCCgcuGGGUUGAguuCGAGGACGu -3'
miRNA:   3'- -CGCCU-----------AGG---UCCAGCUaguGCUCCUGC- -5'
16316 5' -54.9 NC_004084.1 + 7161 0.71 0.522794
Target:  5'- gGUGGuUCgGGGUCGGUCgcaGCGAuccGGACGu -3'
miRNA:   3'- -CGCCuAGgUCCAGCUAG---UGCU---CCUGC- -5'
16316 5' -54.9 NC_004084.1 + 18102 0.71 0.512455
Target:  5'- uCGGAcgUCAGGUCGAgguCGGGGAUGu -3'
miRNA:   3'- cGCCUa-GGUCCAGCUaguGCUCCUGC- -5'
16316 5' -54.9 NC_004084.1 + 40675 0.72 0.462139
Target:  5'- cGCGGAUCCAGaGcaacugagUGAUCACGAuGACu -3'
miRNA:   3'- -CGCCUAGGUC-Ca-------GCUAGUGCUcCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.