Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16316 | 5' | -54.9 | NC_004084.1 | + | 16615 | 0.66 | 0.805328 |
Target: 5'- gGCGGGcUCCucgAGGUCGAUCGugacgcccucguCGucGACGu -3' miRNA: 3'- -CGCCU-AGG---UCCAGCUAGU------------GCucCUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 14264 | 0.66 | 0.795875 |
Target: 5'- cCGGGaCCAGGUgGAgguccucgucgUCGCGAGcGGCu -3' miRNA: 3'- cGCCUaGGUCCAgCU-----------AGUGCUC-CUGc -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 15826 | 0.66 | 0.795875 |
Target: 5'- uCGGcUCCuGGUCGuuguagCACGAGuGGCa -3' miRNA: 3'- cGCCuAGGuCCAGCua----GUGCUC-CUGc -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 23377 | 0.66 | 0.805328 |
Target: 5'- uCGGAUCCGucgCGAgccacuCGAGGACGg -3' miRNA: 3'- cGCCUAGGUccaGCUagu---GCUCCUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 2839 | 0.67 | 0.70464 |
Target: 5'- uCGGcGUCCGcGGUgGAUCGC-AGGACa -3' miRNA: 3'- cGCC-UAGGU-CCAgCUAGUGcUCCUGc -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 2877 | 0.67 | 0.70464 |
Target: 5'- cGCGGccagCCAGcG-CGAUCGCgGAGGAUc -3' miRNA: 3'- -CGCCua--GGUC-CaGCUAGUG-CUCCUGc -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 50029 | 0.68 | 0.655368 |
Target: 5'- aGCGGGgugUCCcGGUCGGUCAgcguguagugguagcUGAGGAg- -3' miRNA: 3'- -CGCCU---AGGuCCAGCUAGU---------------GCUCCUgc -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 6767 | 0.68 | 0.649968 |
Target: 5'- cGCGGAagggcagUCCgAGGUC--UCgGCGGGGACGu -3' miRNA: 3'- -CGCCU-------AGG-UCCAGcuAG-UGCUCCUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 30425 | 0.68 | 0.651048 |
Target: 5'- gGCGGcgaCGGaagCGAUgGCGAGGACGa -3' miRNA: 3'- -CGCCuagGUCca-GCUAgUGCUCCUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 40725 | 0.68 | 0.683335 |
Target: 5'- gGCuGGAUCguGGUCGAcUgGCGgaAGGGCa -3' miRNA: 3'- -CG-CCUAGguCCAGCU-AgUGC--UCCUGc -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 49003 | 0.68 | 0.676903 |
Target: 5'- cGCGcGGUCCGuGUCGAUCGUGAccgacacgacguccuGGACGg -3' miRNA: 3'- -CGC-CUAGGUcCAGCUAGUGCU---------------CCUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 18144 | 0.68 | 0.683335 |
Target: 5'- aUGGAgUCCGGGUCGAUCAgCGcGaGCGu -3' miRNA: 3'- cGCCU-AGGUCCAGCUAGU-GCuCcUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 17915 | 0.68 | 0.694016 |
Target: 5'- aGCGGGcuggucccaccUgCAGGUCGAUCAggucgucgcguuCGAGGcCGu -3' miRNA: 3'- -CGCCU-----------AgGUCCAGCUAGU------------GCUCCuGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 30026 | 0.69 | 0.618609 |
Target: 5'- cGCGccGAUCgAGGUC--UCGCGGGGGCc -3' miRNA: 3'- -CGC--CUAGgUCCAGcuAGUGCUCCUGc -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 5681 | 0.7 | 0.543706 |
Target: 5'- aGCGGAggucgucgaggUCCgcuGGGUUGAguuCGAGGACGu -3' miRNA: 3'- -CGCCU-----------AGG---UCCAGCUaguGCUCCUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 43587 | 0.7 | 0.554265 |
Target: 5'- cGCGGAuccUCCAGuGg-GAUCGCGAGuACGg -3' miRNA: 3'- -CGCCU---AGGUC-CagCUAGUGCUCcUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 46836 | 0.7 | 0.553206 |
Target: 5'- uGCGGcgacaccGUUCAGuGUCGAUUccuCGAGGACa -3' miRNA: 3'- -CGCC-------UAGGUC-CAGCUAGu--GCUCCUGc -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 7161 | 0.71 | 0.522794 |
Target: 5'- gGUGGuUCgGGGUCGGUCgcaGCGAuccGGACGu -3' miRNA: 3'- -CGCCuAGgUCCAGCUAG---UGCU---CCUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 18102 | 0.71 | 0.512455 |
Target: 5'- uCGGAcgUCAGGUCGAgguCGGGGAUGu -3' miRNA: 3'- cGCCUa-GGUCCAGCUaguGCUCCUGC- -5' |
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16316 | 5' | -54.9 | NC_004084.1 | + | 40675 | 0.72 | 0.462139 |
Target: 5'- cGCGGAUCCAGaGcaacugagUGAUCACGAuGACu -3' miRNA: 3'- -CGCCUAGGUC-Ca-------GCUAGUGCUcCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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