miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16317 3' -55.5 NC_004084.1 + 17586 0.66 0.759844
Target:  5'- --gGACCUCGACCUcCGgaaCGUgGACGu -3'
miRNA:   3'- uagCUGGAGCUGGA-GCaa-GCG-CUGCu -5'
16317 3' -55.5 NC_004084.1 + 19797 0.66 0.759844
Target:  5'- -cCGGCUUCaGCCgcggggagUCGUUCcGCGACGGu -3'
miRNA:   3'- uaGCUGGAGcUGG--------AGCAAG-CGCUGCU- -5'
16317 3' -55.5 NC_004084.1 + 38411 0.66 0.759844
Target:  5'- -aCGGCCUCGGCauaaagcgcgaaCUCGagcgaacgCGCGACGu -3'
miRNA:   3'- uaGCUGGAGCUG------------GAGCaa------GCGCUGCu -5'
16317 3' -55.5 NC_004084.1 + 29749 0.66 0.759844
Target:  5'- cUCGACgUUGAgCUCGc-UGCGGCGGu -3'
miRNA:   3'- uAGCUGgAGCUgGAGCaaGCGCUGCU- -5'
16317 3' -55.5 NC_004084.1 + 47002 0.66 0.749681
Target:  5'- -aCGACCgCGAguuCCUCGaggacgUCGCGAuCGAu -3'
miRNA:   3'- uaGCUGGaGCU---GGAGCa-----AGCGCU-GCU- -5'
16317 3' -55.5 NC_004084.1 + 2150 0.66 0.749681
Target:  5'- gGUCGACgUCGuaCUCGUagGCGACa- -3'
miRNA:   3'- -UAGCUGgAGCugGAGCAagCGCUGcu -5'
16317 3' -55.5 NC_004084.1 + 14091 0.66 0.749681
Target:  5'- --aGACgUCGAUgUCG-UCGUGGCGGc -3'
miRNA:   3'- uagCUGgAGCUGgAGCaAGCGCUGCU- -5'
16317 3' -55.5 NC_004084.1 + 32133 0.66 0.749681
Target:  5'- gGUCGACa--GACCUCGcgaGCGGCa- -3'
miRNA:   3'- -UAGCUGgagCUGGAGCaagCGCUGcu -5'
16317 3' -55.5 NC_004084.1 + 26295 0.66 0.739402
Target:  5'- aGUCGACCUCcugGugCUCGa---CGACGAg -3'
miRNA:   3'- -UAGCUGGAG---CugGAGCaagcGCUGCU- -5'
16317 3' -55.5 NC_004084.1 + 45419 0.66 0.739402
Target:  5'- --gGGCCUCGA-CUCGUUCacggGUGAUGGg -3'
miRNA:   3'- uagCUGGAGCUgGAGCAAG----CGCUGCU- -5'
16317 3' -55.5 NC_004084.1 + 39625 0.66 0.729018
Target:  5'- -aCGuCCUCGACgagucgaUCGUaCGCGACGc -3'
miRNA:   3'- uaGCuGGAGCUGg------AGCAaGCGCUGCu -5'
16317 3' -55.5 NC_004084.1 + 44612 0.66 0.729018
Target:  5'- aGUgGGCCgaUCG-CCUCGgUCGCGACc- -3'
miRNA:   3'- -UAgCUGG--AGCuGGAGCaAGCGCUGcu -5'
16317 3' -55.5 NC_004084.1 + 3166 0.66 0.729018
Target:  5'- -cCGACCguaGACgUCG-UCGaCGGCGAg -3'
miRNA:   3'- uaGCUGGag-CUGgAGCaAGC-GCUGCU- -5'
16317 3' -55.5 NC_004084.1 + 8564 0.66 0.729018
Target:  5'- cUCG-CCg-GAUCUCGcUCGCGACGu -3'
miRNA:   3'- uAGCuGGagCUGGAGCaAGCGCUGCu -5'
16317 3' -55.5 NC_004084.1 + 1001 0.66 0.71854
Target:  5'- uGUCcACCUCGAgCUCGccgGCGACGu -3'
miRNA:   3'- -UAGcUGGAGCUgGAGCaagCGCUGCu -5'
16317 3' -55.5 NC_004084.1 + 7236 0.66 0.71854
Target:  5'- -cCGACCUCGACgaUCGgcgCGUgcucGGCGAc -3'
miRNA:   3'- uaGCUGGAGCUGg-AGCaa-GCG----CUGCU- -5'
16317 3' -55.5 NC_004084.1 + 50925 0.67 0.698412
Target:  5'- gAUCGGCCUCGACgUCGacgacccugaucuccUCcuCGACGAg -3'
miRNA:   3'- -UAGCUGGAGCUGgAGCa--------------AGc-GCUGCU- -5'
16317 3' -55.5 NC_004084.1 + 5122 0.67 0.697346
Target:  5'- -cCGACCgUCGAuacaaCCUCGg-CGUGGCGAc -3'
miRNA:   3'- uaGCUGG-AGCU-----GGAGCaaGCGCUGCU- -5'
16317 3' -55.5 NC_004084.1 + 40198 0.67 0.697346
Target:  5'- -gCGACCUCGuucACCUCGa--GCugGACGAg -3'
miRNA:   3'- uaGCUGGAGC---UGGAGCaagCG--CUGCU- -5'
16317 3' -55.5 NC_004084.1 + 16965 0.67 0.697346
Target:  5'- -cCGGCCacugcaaGACCUCGaUCGCGuCGGc -3'
miRNA:   3'- uaGCUGGag-----CUGGAGCaAGCGCuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.