miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16317 5' -57.6 NC_004084.1 + 51193 0.66 0.675648
Target:  5'- uCGUCGaggucggcgcuggcGCGGGcuACUGGGCGUGGugcgucgagcaGCUCGa -3'
miRNA:   3'- -GCAGC--------------UGCCC--UGGCUUGCGCC-----------UGAGC- -5'
16317 5' -57.6 NC_004084.1 + 48640 0.66 0.668318
Target:  5'- uGUCGaACGGccgcaGCCGAugauggaaGCGGGCUCa -3'
miRNA:   3'- gCAGC-UGCCc----UGGCUug------CGCCUGAGc -5'
16317 5' -57.6 NC_004084.1 + 16951 0.66 0.668318
Target:  5'- gCGUCGcgacguCGGGucuUCGAGCGCcuggacGACUCGg -3'
miRNA:   3'- -GCAGCu-----GCCCu--GGCUUGCGc-----CUGAGC- -5'
16317 5' -57.6 NC_004084.1 + 18568 0.66 0.668318
Target:  5'- -cUCGACGGcGCCGcggcCGCcgauGGACUCGa -3'
miRNA:   3'- gcAGCUGCCcUGGCuu--GCG----CCUGAGC- -5'
16317 5' -57.6 NC_004084.1 + 30416 0.66 0.668318
Target:  5'- aCGUCGACGGGcggcgacggaAgCGAugGCgaGGACg-- -3'
miRNA:   3'- -GCAGCUGCCC----------UgGCUugCG--CCUGagc -5'
16317 5' -57.6 NC_004084.1 + 1226 0.66 0.668318
Target:  5'- uCGgCGGCGGGAUCGAGgGCGa--UCGc -3'
miRNA:   3'- -GCaGCUGCCCUGGCUUgCGCcugAGC- -5'
16317 5' -57.6 NC_004084.1 + 29430 0.66 0.66727
Target:  5'- cCGUCGACGGcGAgcuucaCCGcgaacgcGGCGUGGGCgCGa -3'
miRNA:   3'- -GCAGCUGCC-CU------GGC-------UUGCGCCUGaGC- -5'
16317 5' -57.6 NC_004084.1 + 41201 0.66 0.647302
Target:  5'- --cCGAgCGGuguuuGACCGAGCGUcGACUCGa -3'
miRNA:   3'- gcaGCU-GCC-----CUGGCUUGCGcCUGAGC- -5'
16317 5' -57.6 NC_004084.1 + 31386 0.66 0.647302
Target:  5'- -cUCGACGGGGCgGAcuACGCcGAUaUCGg -3'
miRNA:   3'- gcAGCUGCCCUGgCU--UGCGcCUG-AGC- -5'
16317 5' -57.6 NC_004084.1 + 53309 0.67 0.626236
Target:  5'- aCGUUGACccGG-CGAuCGCGGGCUCGg -3'
miRNA:   3'- -GCAGCUGccCUgGCUuGCGCCUGAGC- -5'
16317 5' -57.6 NC_004084.1 + 53255 0.67 0.626236
Target:  5'- uCGUCGACGGcgacgaGAUCGGGC-CGGGCg-- -3'
miRNA:   3'- -GCAGCUGCC------CUGGCUUGcGCCUGagc -5'
16317 5' -57.6 NC_004084.1 + 50092 0.67 0.615705
Target:  5'- aG-CGcCGGGuucauCCGAGCGCGGuACUuCGa -3'
miRNA:   3'- gCaGCuGCCCu----GGCUUGCGCC-UGA-GC- -5'
16317 5' -57.6 NC_004084.1 + 48312 0.67 0.605188
Target:  5'- gCGUCGAagauGGGCCGAAgGuCGGcCUCa -3'
miRNA:   3'- -GCAGCUgc--CCUGGCUUgC-GCCuGAGc -5'
16317 5' -57.6 NC_004084.1 + 8154 0.67 0.598887
Target:  5'- aCGUCGAggaccucgccgccaaCGGcGACgaGGACGCagaGGACUCGu -3'
miRNA:   3'- -GCAGCU---------------GCC-CUGg-CUUGCG---CCUGAGC- -5'
16317 5' -57.6 NC_004084.1 + 6605 0.67 0.594692
Target:  5'- aGUCGGCGGG-CgCGGAgGUaGGACUUc -3'
miRNA:   3'- gCAGCUGCCCuG-GCUUgCG-CCUGAGc -5'
16317 5' -57.6 NC_004084.1 + 2535 0.67 0.594692
Target:  5'- uCGUCGcACGGGugGCCGc-UGCGGACcUCu -3'
miRNA:   3'- -GCAGC-UGCCC--UGGCuuGCGCCUG-AGc -5'
16317 5' -57.6 NC_004084.1 + 17561 0.67 0.588407
Target:  5'- aCGUCGAucucgacggccaguuCgGGGACCucgaccuccgGAACGUGGACgUCGa -3'
miRNA:   3'- -GCAGCU---------------G-CCCUGG----------CUUGCGCCUG-AGC- -5'
16317 5' -57.6 NC_004084.1 + 11729 0.67 0.584225
Target:  5'- aCGUCGcCGGcGACgugcuCGAAuCGCGGACUg- -3'
miRNA:   3'- -GCAGCuGCC-CUG-----GCUU-GCGCCUGAgc -5'
16317 5' -57.6 NC_004084.1 + 56844 0.68 0.573794
Target:  5'- aCGUCGucCuGGACCcguuCGCGGGCUCc -3'
miRNA:   3'- -GCAGCu-GcCCUGGcuu-GCGCCUGAGc -5'
16317 5' -57.6 NC_004084.1 + 14258 0.68 0.573794
Target:  5'- uGUCGAcCGGGACCaGGugGaGGucCUCGu -3'
miRNA:   3'- gCAGCU-GCCCUGG-CUugCgCCu-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.