miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16318 3' -42 NC_004084.1 + 37607 0.66 0.999974
Target:  5'- gCGCUcucaaGACCUUAUCAAACAc----- -3'
miRNA:   3'- -GUGAug---CUGGAAUAGUUUGUcuaaau -5'
16318 3' -42 NC_004084.1 + 5053 0.66 0.999974
Target:  5'- aCACggACGACU---UCGAGCAGGUg-- -3'
miRNA:   3'- -GUGa-UGCUGGaauAGUUUGUCUAaau -5'
16318 3' -42 NC_004084.1 + 53526 0.67 0.999902
Target:  5'- gACUGCGguuucucgccucACCUUAUCAAACAu----- -3'
miRNA:   3'- gUGAUGC------------UGGAAUAGUUUGUcuaaau -5'
16318 3' -42 NC_004084.1 + 4844 0.67 0.999902
Target:  5'- ---cAUGACCUUAUCAAACAu----- -3'
miRNA:   3'- gugaUGCUGGAAUAGUUUGUcuaaau -5'
16318 3' -42 NC_004084.1 + 11202 0.67 0.999902
Target:  5'- aGCUGCGACagag-CGGACGGGUg-- -3'
miRNA:   3'- gUGAUGCUGgaauaGUUUGUCUAaau -5'
16318 3' -42 NC_004084.1 + 49184 0.68 0.99969
Target:  5'- aCGCUggACGcCCUgAUCGAGCAGGUc-- -3'
miRNA:   3'- -GUGA--UGCuGGAaUAGUUUGUCUAaau -5'
16318 3' -42 NC_004084.1 + 33545 0.69 0.999479
Target:  5'- gGC-AUGACCUUAUCAAAC--GUUUAg -3'
miRNA:   3'- gUGaUGCUGGAAUAGUUUGucUAAAU- -5'
16318 3' -42 NC_004084.1 + 7392 0.69 0.999479
Target:  5'- -cCUGCGACCUccUCGAaguACGGGUUUu -3'
miRNA:   3'- guGAUGCUGGAauAGUU---UGUCUAAAu -5'
16318 3' -42 NC_004084.1 + 26609 0.69 0.998933
Target:  5'- aCGCUcgGCaGACCUUAUCAAACAc----- -3'
miRNA:   3'- -GUGA--UG-CUGGAAUAGUUUGUcuaaau -5'
16318 3' -42 NC_004084.1 + 9034 0.7 0.997958
Target:  5'- gACUACGAaucCCgcAUCGAGCGGGUa-- -3'
miRNA:   3'- gUGAUGCU---GGaaUAGUUUGUCUAaau -5'
16318 3' -42 NC_004084.1 + 40487 0.7 0.996958
Target:  5'- aCGCgACGACCUgAUCGAccuGCAGGUg-- -3'
miRNA:   3'- -GUGaUGCUGGAaUAGUU---UGUCUAaau -5'
16318 3' -42 NC_004084.1 + 52195 0.72 0.991329
Target:  5'- aCGCUAuccggaaucuCGACCUcGUCGGGCAGAUc-- -3'
miRNA:   3'- -GUGAU----------GCUGGAaUAGUUUGUCUAaau -5'
16318 3' -42 NC_004084.1 + 24834 1.08 0.029941
Target:  5'- uCACUACGACCUUAUCAAACAGAUUUAu -3'
miRNA:   3'- -GUGAUGCUGGAAUAGUUUGUCUAAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.