miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 82516 0.66 0.810323
Target:  5'- --aGGCCAGCGCagcguagcugGCGCGaugCACAGCa- -3'
miRNA:   3'- uagCCGGUCGUG----------UGUGCg--GUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 101170 0.66 0.810323
Target:  5'- cUUGGCCgcGGCgGCGCACGCCAUcaAGUUc -3'
miRNA:   3'- uAGCCGG--UCG-UGUGUGCGGUG--UCGGa -5'
1632 3' -60.1 NC_001347.2 + 116630 0.66 0.809475
Target:  5'- aGUCGGCCAcgggguugcucuuGCugagcugcaugaGCACgGCGCCGCcGCCg -3'
miRNA:   3'- -UAGCCGGU-------------CG------------UGUG-UGCGGUGuCGGa -5'
1632 3' -60.1 NC_001347.2 + 203324 0.66 0.809475
Target:  5'- -cCGGCCcuuGCGCcgcuuggcuuucuACGCGCCGCgAGCUc -3'
miRNA:   3'- uaGCCGGu--CGUG-------------UGUGCGGUG-UCGGa -5'
1632 3' -60.1 NC_001347.2 + 109540 0.66 0.800917
Target:  5'- -aCGGCguGCACgucgggcguuaugACACGCgGCcGCCUu -3'
miRNA:   3'- uaGCCGguCGUG-------------UGUGCGgUGuCGGA- -5'
1632 3' -60.1 NC_001347.2 + 168194 0.66 0.796584
Target:  5'- uUCGGCCacGGCGCgACaauugacguagggccGCGCCuccgugGCAGCCg -3'
miRNA:   3'- uAGCCGG--UCGUG-UG---------------UGCGG------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 17134 0.66 0.793093
Target:  5'- cGUCGGCCGcCGCcCAUGCCAC-GCg- -3'
miRNA:   3'- -UAGCCGGUcGUGuGUGCGGUGuCGga -5'
1632 3' -60.1 NC_001347.2 + 113993 0.66 0.793093
Target:  5'- -cCGcCCAcGUAgACcgGCGCCACAGCCUg -3'
miRNA:   3'- uaGCcGGU-CGUgUG--UGCGGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 38462 0.66 0.793093
Target:  5'- -cCGGCCccGC-CGCGCaGCC-CAGCCa -3'
miRNA:   3'- uaGCCGGu-CGuGUGUG-CGGuGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 30568 0.66 0.792216
Target:  5'- uUCGGCUcccGCACACagacgacGCGCCgggcggcuuccuGCGGCCg -3'
miRNA:   3'- uAGCCGGu--CGUGUG-------UGCGG------------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 77965 0.66 0.784271
Target:  5'- -gCGGCaAGCACAUccgcuuguACGUgGCGGCCg -3'
miRNA:   3'- uaGCCGgUCGUGUG--------UGCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 85482 0.66 0.784271
Target:  5'- gAUCGGCCAgGUACuCGCGCaGCGGUUc -3'
miRNA:   3'- -UAGCCGGU-CGUGuGUGCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 183477 0.66 0.775321
Target:  5'- cUCGGCCucGGgAgACGCGC-GCAGCCc -3'
miRNA:   3'- uAGCCGG--UCgUgUGUGCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 142641 0.66 0.77442
Target:  5'- -aCcGCCAGCAaACGCcgcgacaacggccGCCGCAGCCa -3'
miRNA:   3'- uaGcCGGUCGUgUGUG-------------CGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 174725 0.66 0.766253
Target:  5'- --gGGCCuGCGCaacuACGCGCCGCuGCg- -3'
miRNA:   3'- uagCCGGuCGUG----UGUGCGGUGuCGga -5'
1632 3' -60.1 NC_001347.2 + 64037 0.66 0.766253
Target:  5'- cUCGGUCAGCAauCugACGUC-CAGCa- -3'
miRNA:   3'- uAGCCGGUCGU--GugUGCGGuGUCGga -5'
1632 3' -60.1 NC_001347.2 + 37998 0.66 0.766253
Target:  5'- cUCGGgCAGCA-GC-CGCCgcGCGGCCUc -3'
miRNA:   3'- uAGCCgGUCGUgUGuGCGG--UGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 1220 0.66 0.766253
Target:  5'- uUUGGCCAacaGCACGgGCCGC-GCCa -3'
miRNA:   3'- uAGCCGGUcg-UGUGUgCGGUGuCGGa -5'
1632 3' -60.1 NC_001347.2 + 75451 0.66 0.766253
Target:  5'- cGUCGGgCAGCucaACGCGCGCCA--GCUc -3'
miRNA:   3'- -UAGCCgGUCG---UGUGUGCGGUguCGGa -5'
1632 3' -60.1 NC_001347.2 + 166277 0.67 0.757073
Target:  5'- -aCGGCUAGCGCGCguuGCaCCGCGGUa- -3'
miRNA:   3'- uaGCCGGUCGUGUG---UGcGGUGUCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.