miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 89994 0.67 0.747791
Target:  5'- -cCGGCguGUACACcUGUCGCAGCa- -3'
miRNA:   3'- uaGCCGguCGUGUGuGCGGUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 114412 0.67 0.75615
Target:  5'- -gCGGCCGuGUucgaugaaACGCGCGCCGCccgucucAGCCa -3'
miRNA:   3'- uaGCCGGU-CG--------UGUGUGCGGUG-------UCGGa -5'
1632 3' -60.1 NC_001347.2 + 117382 0.67 0.757073
Target:  5'- cGUCGGCCAG-ACGCG-GCaACAGCUg -3'
miRNA:   3'- -UAGCCGGUCgUGUGUgCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 162092 0.67 0.757073
Target:  5'- gAUCGGCCucgucgcugAGCGCuuucCGgGCCGCgucGGCCUg -3'
miRNA:   3'- -UAGCCGG---------UCGUGu---GUgCGGUG---UCGGA- -5'
1632 3' -60.1 NC_001347.2 + 114607 0.67 0.757073
Target:  5'- -gCGGCCuucuuCACGCGCCACugggguGCCg -3'
miRNA:   3'- uaGCCGGucgu-GUGUGCGGUGu-----CGGa -5'
1632 3' -60.1 NC_001347.2 + 88628 0.67 0.746857
Target:  5'- -gCGGCCuGCAC-CGCggcuugaGCgGCGGCCUg -3'
miRNA:   3'- uaGCCGGuCGUGuGUG-------CGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 63094 0.67 0.746857
Target:  5'- cUCGGCaAGUGCcgccgugGC-CGCCGCGGCCg -3'
miRNA:   3'- uAGCCGgUCGUG-------UGuGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 193164 0.67 0.709798
Target:  5'- cUCuGCCuGgGCACGCGCguCGGCCg -3'
miRNA:   3'- uAGcCGGuCgUGUGUGCGguGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 77034 0.67 0.718451
Target:  5'- -aCGGUCgacgcagGGCACGCGCguGCCGcCGGCCUc -3'
miRNA:   3'- uaGCCGG-------UCGUGUGUG--CGGU-GUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 47313 0.67 0.738414
Target:  5'- -aCGGUuuaCAGguCGCACGCCAguCAGCUa -3'
miRNA:   3'- uaGCCG---GUCguGUGUGCGGU--GUCGGa -5'
1632 3' -60.1 NC_001347.2 + 52910 0.67 0.719409
Target:  5'- -aCGccGCCGGUucGCugGCGCCACAcGCCc -3'
miRNA:   3'- uaGC--CGGUCG--UGugUGCGGUGU-CGGa -5'
1632 3' -60.1 NC_001347.2 + 124247 0.67 0.719409
Target:  5'- -gCGGCCuacGUGCACGCGCC-CGGUa- -3'
miRNA:   3'- uaGCCGGu--CGUGUGUGCGGuGUCGga -5'
1632 3' -60.1 NC_001347.2 + 63490 0.67 0.719409
Target:  5'- --gGGCCAgcagcucaucacGCagacgaugccGCACACGCCACAGgCCg -3'
miRNA:   3'- uagCCGGU------------CG----------UGUGUGCGGUGUC-GGa -5'
1632 3' -60.1 NC_001347.2 + 172046 0.67 0.719409
Target:  5'- cAUC-GCCAGCGCGCgcugggaaGCGCUGCGcGCCg -3'
miRNA:   3'- -UAGcCGGUCGUGUG--------UGCGGUGU-CGGa -5'
1632 3' -60.1 NC_001347.2 + 104633 0.67 0.72895
Target:  5'- -gCGGCCA-CACACAaccCCugGGCCUc -3'
miRNA:   3'- uaGCCGGUcGUGUGUgc-GGugUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 18820 0.67 0.737471
Target:  5'- -cUGGCaCGGCGCacugggcaccaucACACGCuCGCAGCUa -3'
miRNA:   3'- uaGCCG-GUCGUG-------------UGUGCG-GUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 158039 0.67 0.72895
Target:  5'- -cCGGaCAGCAgGCGCGUCACguagAGCCc -3'
miRNA:   3'- uaGCCgGUCGUgUGUGCGGUG----UCGGa -5'
1632 3' -60.1 NC_001347.2 + 75451 0.66 0.766253
Target:  5'- cGUCGGgCAGCucaACGCGCGCCA--GCUc -3'
miRNA:   3'- -UAGCCgGUCG---UGUGUGCGGUguCGGa -5'
1632 3' -60.1 NC_001347.2 + 77965 0.66 0.784271
Target:  5'- -gCGGCaAGCACAUccgcuuguACGUgGCGGCCg -3'
miRNA:   3'- uaGCCGgUCGUGUG--------UGCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 183477 0.66 0.775321
Target:  5'- cUCGGCCucGGgAgACGCGC-GCAGCCc -3'
miRNA:   3'- uAGCCGG--UCgUgUGUGCGgUGUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.