miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 135173 1.06 0.002564
Target:  5'- cAUCGGCCAGCACACACGCCACAGCCUg -3'
miRNA:   3'- -UAGCCGGUCGUGUGUGCGGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 105967 0.8 0.144788
Target:  5'- cGUCGGCgAGcCGCGCACGCCcgcGCGGCCg -3'
miRNA:   3'- -UAGCCGgUC-GUGUGUGCGG---UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 228191 0.78 0.19842
Target:  5'- cUCGGCCGGCAucCACGCGCCACGuucaccgcguuguGCCc -3'
miRNA:   3'- uAGCCGGUCGU--GUGUGCGGUGU-------------CGGa -5'
1632 3' -60.1 NC_001347.2 + 169081 0.78 0.215705
Target:  5'- cUCGGCCAGCACGCgcugccugcucgaaaGCGUguaCACGGCCUc -3'
miRNA:   3'- uAGCCGGUCGUGUG---------------UGCG---GUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 117477 0.76 0.282362
Target:  5'- -gCGGCCAGCAgACAgGCgGCGGCUUc -3'
miRNA:   3'- uaGCCGGUCGUgUGUgCGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 185041 0.75 0.322814
Target:  5'- uUCGGCCGGC--GCGCGCUugAGCUg -3'
miRNA:   3'- uAGCCGGUCGugUGUGCGGugUCGGa -5'
1632 3' -60.1 NC_001347.2 + 200257 0.74 0.359711
Target:  5'- gAUCuGGCUAGC-CugGCGCuCACGGCCg -3'
miRNA:   3'- -UAG-CCGGUCGuGugUGCG-GUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 40225 0.73 0.375273
Target:  5'- ---cGCCGGCACACcCGCCACAcGCCc -3'
miRNA:   3'- uagcCGGUCGUGUGuGCGGUGU-CGGa -5'
1632 3' -60.1 NC_001347.2 + 169123 0.73 0.383222
Target:  5'- nUCGGCCGcGCGCGcCGCGCUGCAGUg- -3'
miRNA:   3'- uAGCCGGU-CGUGU-GUGCGGUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 153765 0.73 0.383222
Target:  5'- gGUCGcGCCAGUGCGCcgucgACGCCGCucaGGCCg -3'
miRNA:   3'- -UAGC-CGGUCGUGUG-----UGCGGUG---UCGGa -5'
1632 3' -60.1 NC_001347.2 + 12341 0.73 0.399454
Target:  5'- -aCGGCgAGCaaauGCGCACGCCGCuGCUa -3'
miRNA:   3'- uaGCCGgUCG----UGUGUGCGGUGuCGGa -5'
1632 3' -60.1 NC_001347.2 + 81493 0.72 0.450684
Target:  5'- cUCGGCgGGUGCGCAcCGCCGguGCUg -3'
miRNA:   3'- uAGCCGgUCGUGUGU-GCGGUguCGGa -5'
1632 3' -60.1 NC_001347.2 + 79632 0.72 0.45957
Target:  5'- uUCGGCCGGCugcuGCACcacaGCGCCagGCGGCUg -3'
miRNA:   3'- uAGCCGGUCG----UGUG----UGCGG--UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 154820 0.72 0.45957
Target:  5'- -aUGGCCAGCggcgcGCACAguCGCCGCAGUUg -3'
miRNA:   3'- uaGCCGGUCG-----UGUGU--GCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 83908 0.72 0.468548
Target:  5'- -gCGGCagugucaAGUaccagGCGCugGCCACAGCCUc -3'
miRNA:   3'- uaGCCGg------UCG-----UGUGugCGGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 173965 0.71 0.486769
Target:  5'- -gCGGCUAGaGCGCGgGCCGCGuGCCUg -3'
miRNA:   3'- uaGCCGGUCgUGUGUgCGGUGU-CGGA- -5'
1632 3' -60.1 NC_001347.2 + 39199 0.71 0.486769
Target:  5'- uGUUGGCCAaaaacGC-CGCGCGCCACacggcgcccauGGCCUg -3'
miRNA:   3'- -UAGCCGGU-----CGuGUGUGCGGUG-----------UCGGA- -5'
1632 3' -60.1 NC_001347.2 + 151359 0.71 0.496004
Target:  5'- cGUgGGCCcagccuGGCGCACuACGUgACGGCCUg -3'
miRNA:   3'- -UAgCCGG------UCGUGUG-UGCGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 85512 0.71 0.505318
Target:  5'- -gCGGCUugagcgGGCGCGCGCGCUugAGCg- -3'
miRNA:   3'- uaGCCGG------UCGUGUGUGCGGugUCGga -5'
1632 3' -60.1 NC_001347.2 + 96185 0.71 0.524164
Target:  5'- --aGGCCucgGGCACGgGCGUgGCGGCCg -3'
miRNA:   3'- uagCCGG---UCGUGUgUGCGgUGUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.