miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 158906 0.7 0.532733
Target:  5'- uGUUGGCCaccaugcugagcaAGUACACGCGCaugucCAGCCUg -3'
miRNA:   3'- -UAGCCGG-------------UCGUGUGUGCGgu---GUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 193435 0.7 0.562604
Target:  5'- cAUUGGCaCGGUcuCGCACGCCACcuGCCg -3'
miRNA:   3'- -UAGCCG-GUCGu-GUGUGCGGUGu-CGGa -5'
1632 3' -60.1 NC_001347.2 + 38491 0.7 0.572341
Target:  5'- -gCGGgCAGCAC-CGCGCCcagcgcCAGCCa -3'
miRNA:   3'- uaGCCgGUCGUGuGUGCGGu-----GUCGGa -5'
1632 3' -60.1 NC_001347.2 + 722 0.7 0.581137
Target:  5'- --gGcGCCAGCACgcgccguGCACGUCGCuGCCUa -3'
miRNA:   3'- uagC-CGGUCGUG-------UGUGCGGUGuCGGA- -5'
1632 3' -60.1 NC_001347.2 + 130408 0.7 0.582116
Target:  5'- -aCcGCCAGCAacCACGCCACuGCCg -3'
miRNA:   3'- uaGcCGGUCGUguGUGCGGUGuCGGa -5'
1632 3' -60.1 NC_001347.2 + 187518 0.69 0.591925
Target:  5'- uGUCGGUgcGCgagACGCugGUCACAGCCa -3'
miRNA:   3'- -UAGCCGguCG---UGUGugCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 197723 0.69 0.591925
Target:  5'- cUCgGGCCuGCgACGCgACGCCgACGGCCa -3'
miRNA:   3'- uAG-CCGGuCG-UGUG-UGCGG-UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 159289 0.69 0.591925
Target:  5'- -cUGG-CGGCGcCGgGCGCCACGGCCa -3'
miRNA:   3'- uaGCCgGUCGU-GUgUGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 103547 0.69 0.600777
Target:  5'- cGUC-GCCAccgacGCACAUACGCCGCugcugcaGGCCUg -3'
miRNA:   3'- -UAGcCGGU-----CGUGUGUGCGGUG-------UCGGA- -5'
1632 3' -60.1 NC_001347.2 + 228711 0.69 0.601762
Target:  5'- uGUCGGcCCAGuCGcCAC-CGCCGCGGCg- -3'
miRNA:   3'- -UAGCC-GGUC-GU-GUGuGCGGUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 222792 0.69 0.611619
Target:  5'- uGUCGGCCgacaaaucgcAGCugucuuCGC-CGCCGCAGCUg -3'
miRNA:   3'- -UAGCCGG----------UCGu-----GUGuGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 158711 0.69 0.621491
Target:  5'- cGUCGGCggccacauugugCAGCAgGCGCGCgGCGGUUUa -3'
miRNA:   3'- -UAGCCG------------GUCGUgUGUGCGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 140038 0.69 0.621491
Target:  5'- cGUCGGCgCGGCAUcccaGCGCCggcgguACGGCCa -3'
miRNA:   3'- -UAGCCG-GUCGUGug--UGCGG------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 16066 0.69 0.621491
Target:  5'- -aCGGCCcggcAGCAC-CAUGCCGgAGCUa -3'
miRNA:   3'- uaGCCGG----UCGUGuGUGCGGUgUCGGa -5'
1632 3' -60.1 NC_001347.2 + 157207 0.69 0.631371
Target:  5'- gAUCGGCC-GCGgu-GCGCUGCAGCCg -3'
miRNA:   3'- -UAGCCGGuCGUgugUGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 65206 0.69 0.635323
Target:  5'- -cCGGCCGuGUACACGugcguggacgaccugUGCCGCGGCUa -3'
miRNA:   3'- uaGCCGGU-CGUGUGU---------------GCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 38676 0.69 0.64125
Target:  5'- cGUCGuGCCGGCcCAC-CGCCggcGCAGCUc -3'
miRNA:   3'- -UAGC-CGGUCGuGUGuGCGG---UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 1738 0.69 0.64125
Target:  5'- gGUgGGCCGGCACGacggugGCGCUGCAgacGCCg -3'
miRNA:   3'- -UAgCCGGUCGUGUg-----UGCGGUGU---CGGa -5'
1632 3' -60.1 NC_001347.2 + 115285 0.69 0.64125
Target:  5'- -aCGGCCAGCuC-CACGCuauaCAUAGCCc -3'
miRNA:   3'- uaGCCGGUCGuGuGUGCG----GUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 130086 0.69 0.64125
Target:  5'- cUCGcaacCCAuGCAC-CGCGCCAUGGCCUa -3'
miRNA:   3'- uAGCc---GGU-CGUGuGUGCGGUGUCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.