miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 167587 0.68 0.651123
Target:  5'- -cUGGCCGGCugGaucaGCGCCAUuugugcguaGGCCg -3'
miRNA:   3'- uaGCCGGUCGugUg---UGCGGUG---------UCGGa -5'
1632 3' -60.1 NC_001347.2 + 136097 0.68 0.660983
Target:  5'- -aCGGaCCGGCGC-CGgGCCuCGGCCg -3'
miRNA:   3'- uaGCC-GGUCGUGuGUgCGGuGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 136496 0.68 0.660983
Target:  5'- -cUGGCCcGCGCAUGCGCCccGgGGCCc -3'
miRNA:   3'- uaGCCGGuCGUGUGUGCGG--UgUCGGa -5'
1632 3' -60.1 NC_001347.2 + 168633 0.68 0.664921
Target:  5'- cUCGGCaacgcacccacgaaGGCGCGCACGCgcuCGCGGUCa -3'
miRNA:   3'- uAGCCGg-------------UCGUGUGUGCG---GUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 149977 0.68 0.67082
Target:  5'- -cCGGCCAGCACGgC-CGCCACcaaGGUg- -3'
miRNA:   3'- uaGCCGGUCGUGU-GuGCGGUG---UCGga -5'
1632 3' -60.1 NC_001347.2 + 117807 0.68 0.67082
Target:  5'- -aCGGCCgcucGGCGCACuGCGCCA--GCCa -3'
miRNA:   3'- uaGCCGG----UCGUGUG-UGCGGUguCGGa -5'
1632 3' -60.1 NC_001347.2 + 99540 0.68 0.680629
Target:  5'- -gCGGCCGGguCGCGCGgCagugACAGCUUg -3'
miRNA:   3'- uaGCCGGUCguGUGUGCgG----UGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 110538 0.68 0.680629
Target:  5'- aAUCGGCC-GCgaauggaaGCGCGCGCCAUcauccGCCg -3'
miRNA:   3'- -UAGCCGGuCG--------UGUGUGCGGUGu----CGGa -5'
1632 3' -60.1 NC_001347.2 + 195647 0.68 0.680629
Target:  5'- -cCGGCCuGUuguguCGCACGCCcgaggaucugGCGGCCg -3'
miRNA:   3'- uaGCCGGuCGu----GUGUGCGG----------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 156966 0.68 0.680629
Target:  5'- -gUGGCgAGCGCGCuccgggccaucGCGaCCGCAGUCUg -3'
miRNA:   3'- uaGCCGgUCGUGUG-----------UGC-GGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 163612 0.68 0.690399
Target:  5'- --aGGCCAGUgucaGCGCcgaGCCGCGGCUg -3'
miRNA:   3'- uagCCGGUCG----UGUGug-CGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 164828 0.68 0.690399
Target:  5'- --gGGCCGGCAgGgCcccuuCGCCGCAGCUg -3'
miRNA:   3'- uagCCGGUCGUgU-Gu----GCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 209767 0.68 0.690399
Target:  5'- -aCGGCCAGUuCuuGCGCUuCGGCCg -3'
miRNA:   3'- uaGCCGGUCGuGugUGCGGuGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 89542 0.68 0.699155
Target:  5'- -cCGGCCaggcgGGCACcuCGCGCCccgagaaGCGGCCg -3'
miRNA:   3'- uaGCCGG-----UCGUGu-GUGCGG-------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 193164 0.67 0.709798
Target:  5'- cUCuGCCuGgGCACGCGCguCGGCCg -3'
miRNA:   3'- uAGcCGGuCgUGUGUGCGguGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 77034 0.67 0.718451
Target:  5'- -aCGGUCgacgcagGGCACGCGCguGCCGcCGGCCUc -3'
miRNA:   3'- uaGCCGG-------UCGUGUGUG--CGGU-GUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 52910 0.67 0.719409
Target:  5'- -aCGccGCCGGUucGCugGCGCCACAcGCCc -3'
miRNA:   3'- uaGC--CGGUCG--UGugUGCGGUGU-CGGa -5'
1632 3' -60.1 NC_001347.2 + 124247 0.67 0.719409
Target:  5'- -gCGGCCuacGUGCACGCGCC-CGGUa- -3'
miRNA:   3'- uaGCCGGu--CGUGUGUGCGGuGUCGga -5'
1632 3' -60.1 NC_001347.2 + 63490 0.67 0.719409
Target:  5'- --gGGCCAgcagcucaucacGCagacgaugccGCACACGCCACAGgCCg -3'
miRNA:   3'- uagCCGGU------------CG----------UGUGUGCGGUGUC-GGa -5'
1632 3' -60.1 NC_001347.2 + 172046 0.67 0.719409
Target:  5'- cAUC-GCCAGCGCGCgcugggaaGCGCUGCGcGCCg -3'
miRNA:   3'- -UAGcCGGUCGUGUG--------UGCGGUGU-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.