Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1632 | 3' | -60.1 | NC_001347.2 | + | 117382 | 0.67 | 0.757073 |
Target: 5'- cGUCGGCCAG-ACGCG-GCaACAGCUg -3' miRNA: 3'- -UAGCCGGUCgUGUGUgCGgUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 166277 | 0.67 | 0.757073 |
Target: 5'- -aCGGCUAGCGCGCguuGCaCCGCGGUa- -3' miRNA: 3'- uaGCCGGUCGUGUG---UGcGGUGUCGga -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 162092 | 0.67 | 0.757073 |
Target: 5'- gAUCGGCCucgucgcugAGCGCuuucCGgGCCGCgucGGCCUg -3' miRNA: 3'- -UAGCCGG---------UCGUGu---GUgCGGUG---UCGGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 114412 | 0.67 | 0.75615 |
Target: 5'- -gCGGCCGuGUucgaugaaACGCGCGCCGCccgucucAGCCa -3' miRNA: 3'- uaGCCGGU-CG--------UGUGUGCGGUG-------UCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 89994 | 0.67 | 0.747791 |
Target: 5'- -cCGGCguGUACACcUGUCGCAGCa- -3' miRNA: 3'- uaGCCGguCGUGUGuGCGGUGUCGga -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 36770 | 0.67 | 0.747791 |
Target: 5'- -cUGGCaGGgACACGCGCUACguAGCCg -3' miRNA: 3'- uaGCCGgUCgUGUGUGCGGUG--UCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 221029 | 0.67 | 0.747791 |
Target: 5'- uUUGGCgCGuGCACGCgaACGCCGCAccGCCc -3' miRNA: 3'- uAGCCG-GU-CGUGUG--UGCGGUGU--CGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 68739 | 0.67 | 0.747791 |
Target: 5'- --aGGCCguggAGCGaguGC-CGCCGCAGCCg -3' miRNA: 3'- uagCCGG----UCGUg--UGuGCGGUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 31318 | 0.67 | 0.747791 |
Target: 5'- --aGGUCGGCAC-CGCGCCACcggaaGGaCCUc -3' miRNA: 3'- uagCCGGUCGUGuGUGCGGUG-----UC-GGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 63094 | 0.67 | 0.746857 |
Target: 5'- cUCGGCaAGUGCcgccgugGC-CGCCGCGGCCg -3' miRNA: 3'- uAGCCGgUCGUG-------UGuGCGGUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 88628 | 0.67 | 0.746857 |
Target: 5'- -gCGGCCuGCAC-CGCggcuugaGCgGCGGCCUg -3' miRNA: 3'- uaGCCGGuCGUGuGUG-------CGgUGUCGGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 47313 | 0.67 | 0.738414 |
Target: 5'- -aCGGUuuaCAGguCGCACGCCAguCAGCUa -3' miRNA: 3'- uaGCCG---GUCguGUGUGCGGU--GUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 18820 | 0.67 | 0.737471 |
Target: 5'- -cUGGCaCGGCGCacugggcaccaucACACGCuCGCAGCUa -3' miRNA: 3'- uaGCCG-GUCGUG-------------UGUGCG-GUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 158039 | 0.67 | 0.72895 |
Target: 5'- -cCGGaCAGCAgGCGCGUCACguagAGCCc -3' miRNA: 3'- uaGCCgGUCGUgUGUGCGGUG----UCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 104633 | 0.67 | 0.72895 |
Target: 5'- -gCGGCCA-CACACAaccCCugGGCCUc -3' miRNA: 3'- uaGCCGGUcGUGUGUgc-GGugUCGGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 52910 | 0.67 | 0.719409 |
Target: 5'- -aCGccGCCGGUucGCugGCGCCACAcGCCc -3' miRNA: 3'- uaGC--CGGUCG--UGugUGCGGUGU-CGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 124247 | 0.67 | 0.719409 |
Target: 5'- -gCGGCCuacGUGCACGCGCC-CGGUa- -3' miRNA: 3'- uaGCCGGu--CGUGUGUGCGGuGUCGga -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 63490 | 0.67 | 0.719409 |
Target: 5'- --gGGCCAgcagcucaucacGCagacgaugccGCACACGCCACAGgCCg -3' miRNA: 3'- uagCCGGU------------CG----------UGUGUGCGGUGUC-GGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 172046 | 0.67 | 0.719409 |
Target: 5'- cAUC-GCCAGCGCGCgcugggaaGCGCUGCGcGCCg -3' miRNA: 3'- -UAGcCGGUCGUGUG--------UGCGGUGU-CGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 37055 | 0.67 | 0.719409 |
Target: 5'- uUCGGCCgcggaGGUGCugGCgGCCGUGGCCUg -3' miRNA: 3'- uAGCCGG-----UCGUGugUG-CGGUGUCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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