Results 61 - 80 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1632 | 3' | -60.1 | NC_001347.2 | + | 65206 | 0.69 | 0.635323 |
Target: 5'- -cCGGCCGuGUACACGugcguggacgaccugUGCCGCGGCUa -3' miRNA: 3'- uaGCCGGU-CGUGUGU---------------GCGGUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 157207 | 0.69 | 0.631371 |
Target: 5'- gAUCGGCC-GCGgu-GCGCUGCAGCCg -3' miRNA: 3'- -UAGCCGGuCGUgugUGCGGUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 16066 | 0.69 | 0.621491 |
Target: 5'- -aCGGCCcggcAGCAC-CAUGCCGgAGCUa -3' miRNA: 3'- uaGCCGG----UCGUGuGUGCGGUgUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 158711 | 0.69 | 0.621491 |
Target: 5'- cGUCGGCggccacauugugCAGCAgGCGCGCgGCGGUUUa -3' miRNA: 3'- -UAGCCG------------GUCGUgUGUGCGgUGUCGGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 140038 | 0.69 | 0.621491 |
Target: 5'- cGUCGGCgCGGCAUcccaGCGCCggcgguACGGCCa -3' miRNA: 3'- -UAGCCG-GUCGUGug--UGCGG------UGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 222792 | 0.69 | 0.611619 |
Target: 5'- uGUCGGCCgacaaaucgcAGCugucuuCGC-CGCCGCAGCUg -3' miRNA: 3'- -UAGCCGG----------UCGu-----GUGuGCGGUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 228711 | 0.69 | 0.601762 |
Target: 5'- uGUCGGcCCAGuCGcCAC-CGCCGCGGCg- -3' miRNA: 3'- -UAGCC-GGUC-GU-GUGuGCGGUGUCGga -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 103547 | 0.69 | 0.600777 |
Target: 5'- cGUC-GCCAccgacGCACAUACGCCGCugcugcaGGCCUg -3' miRNA: 3'- -UAGcCGGU-----CGUGUGUGCGGUG-------UCGGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 159289 | 0.69 | 0.591925 |
Target: 5'- -cUGG-CGGCGcCGgGCGCCACGGCCa -3' miRNA: 3'- uaGCCgGUCGU-GUgUGCGGUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 197723 | 0.69 | 0.591925 |
Target: 5'- cUCgGGCCuGCgACGCgACGCCgACGGCCa -3' miRNA: 3'- uAG-CCGGuCG-UGUG-UGCGG-UGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 187518 | 0.69 | 0.591925 |
Target: 5'- uGUCGGUgcGCgagACGCugGUCACAGCCa -3' miRNA: 3'- -UAGCCGguCG---UGUGugCGGUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 130408 | 0.7 | 0.582116 |
Target: 5'- -aCcGCCAGCAacCACGCCACuGCCg -3' miRNA: 3'- uaGcCGGUCGUguGUGCGGUGuCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 722 | 0.7 | 0.581137 |
Target: 5'- --gGcGCCAGCACgcgccguGCACGUCGCuGCCUa -3' miRNA: 3'- uagC-CGGUCGUG-------UGUGCGGUGuCGGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 38491 | 0.7 | 0.572341 |
Target: 5'- -gCGGgCAGCAC-CGCGCCcagcgcCAGCCa -3' miRNA: 3'- uaGCCgGUCGUGuGUGCGGu-----GUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 193435 | 0.7 | 0.562604 |
Target: 5'- cAUUGGCaCGGUcuCGCACGCCACcuGCCg -3' miRNA: 3'- -UAGCCG-GUCGu-GUGUGCGGUGu-CGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 158906 | 0.7 | 0.532733 |
Target: 5'- uGUUGGCCaccaugcugagcaAGUACACGCGCaugucCAGCCUg -3' miRNA: 3'- -UAGCCGG-------------UCGUGUGUGCGgu---GUCGGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 96185 | 0.71 | 0.524164 |
Target: 5'- --aGGCCucgGGCACGgGCGUgGCGGCCg -3' miRNA: 3'- uagCCGG---UCGUGUgUGCGgUGUCGGa -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 85512 | 0.71 | 0.505318 |
Target: 5'- -gCGGCUugagcgGGCGCGCGCGCUugAGCg- -3' miRNA: 3'- uaGCCGG------UCGUGUGUGCGGugUCGga -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 151359 | 0.71 | 0.496004 |
Target: 5'- cGUgGGCCcagccuGGCGCACuACGUgACGGCCUg -3' miRNA: 3'- -UAgCCGG------UCGUGUG-UGCGgUGUCGGA- -5' |
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1632 | 3' | -60.1 | NC_001347.2 | + | 173965 | 0.71 | 0.486769 |
Target: 5'- -gCGGCUAGaGCGCGgGCCGCGuGCCUg -3' miRNA: 3'- uaGCCGGUCgUGUGUgCGGUGU-CGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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