miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 63490 0.67 0.719409
Target:  5'- --gGGCCAgcagcucaucacGCagacgaugccGCACACGCCACAGgCCg -3'
miRNA:   3'- uagCCGGU------------CG----------UGUGUGCGGUGUC-GGa -5'
1632 3' -60.1 NC_001347.2 + 64037 0.66 0.766253
Target:  5'- cUCGGUCAGCAauCugACGUC-CAGCa- -3'
miRNA:   3'- uAGCCGGUCGU--GugUGCGGuGUCGga -5'
1632 3' -60.1 NC_001347.2 + 65206 0.69 0.635323
Target:  5'- -cCGGCCGuGUACACGugcguggacgaccugUGCCGCGGCUa -3'
miRNA:   3'- uaGCCGGU-CGUGUGU---------------GCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 68739 0.67 0.747791
Target:  5'- --aGGCCguggAGCGaguGC-CGCCGCAGCCg -3'
miRNA:   3'- uagCCGG----UCGUg--UGuGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 75451 0.66 0.766253
Target:  5'- cGUCGGgCAGCucaACGCGCGCCA--GCUc -3'
miRNA:   3'- -UAGCCgGUCG---UGUGUGCGGUguCGGa -5'
1632 3' -60.1 NC_001347.2 + 77034 0.67 0.718451
Target:  5'- -aCGGUCgacgcagGGCACGCGCguGCCGcCGGCCUc -3'
miRNA:   3'- uaGCCGG-------UCGUGUGUG--CGGU-GUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 77965 0.66 0.784271
Target:  5'- -gCGGCaAGCACAUccgcuuguACGUgGCGGCCg -3'
miRNA:   3'- uaGCCGgUCGUGUG--------UGCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 79632 0.72 0.45957
Target:  5'- uUCGGCCGGCugcuGCACcacaGCGCCagGCGGCUg -3'
miRNA:   3'- uAGCCGGUCG----UGUG----UGCGG--UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 81493 0.72 0.450684
Target:  5'- cUCGGCgGGUGCGCAcCGCCGguGCUg -3'
miRNA:   3'- uAGCCGgUCGUGUGU-GCGGUguCGGa -5'
1632 3' -60.1 NC_001347.2 + 82516 0.66 0.810323
Target:  5'- --aGGCCAGCGCagcguagcugGCGCGaugCACAGCa- -3'
miRNA:   3'- uagCCGGUCGUG----------UGUGCg--GUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 83908 0.72 0.468548
Target:  5'- -gCGGCagugucaAGUaccagGCGCugGCCACAGCCUc -3'
miRNA:   3'- uaGCCGg------UCG-----UGUGugCGGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 85482 0.66 0.784271
Target:  5'- gAUCGGCCAgGUACuCGCGCaGCGGUUc -3'
miRNA:   3'- -UAGCCGGU-CGUGuGUGCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 85512 0.71 0.505318
Target:  5'- -gCGGCUugagcgGGCGCGCGCGCUugAGCg- -3'
miRNA:   3'- uaGCCGG------UCGUGUGUGCGGugUCGga -5'
1632 3' -60.1 NC_001347.2 + 88628 0.67 0.746857
Target:  5'- -gCGGCCuGCAC-CGCggcuugaGCgGCGGCCUg -3'
miRNA:   3'- uaGCCGGuCGUGuGUG-------CGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 89542 0.68 0.699155
Target:  5'- -cCGGCCaggcgGGCACcuCGCGCCccgagaaGCGGCCg -3'
miRNA:   3'- uaGCCGG-----UCGUGu-GUGCGG-------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 89994 0.67 0.747791
Target:  5'- -cCGGCguGUACACcUGUCGCAGCa- -3'
miRNA:   3'- uaGCCGguCGUGUGuGCGGUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 96185 0.71 0.524164
Target:  5'- --aGGCCucgGGCACGgGCGUgGCGGCCg -3'
miRNA:   3'- uagCCGG---UCGUGUgUGCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 99540 0.68 0.680629
Target:  5'- -gCGGCCGGguCGCGCGgCagugACAGCUUg -3'
miRNA:   3'- uaGCCGGUCguGUGUGCgG----UGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 101170 0.66 0.810323
Target:  5'- cUUGGCCgcGGCgGCGCACGCCAUcaAGUUc -3'
miRNA:   3'- uAGCCGG--UCG-UGUGUGCGGUG--UCGGa -5'
1632 3' -60.1 NC_001347.2 + 103547 0.69 0.600777
Target:  5'- cGUC-GCCAccgacGCACAUACGCCGCugcugcaGGCCUg -3'
miRNA:   3'- -UAGcCGGU-----CGUGUGUGCGGUG-------UCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.