miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 104633 0.67 0.72895
Target:  5'- -gCGGCCA-CACACAaccCCugGGCCUc -3'
miRNA:   3'- uaGCCGGUcGUGUGUgc-GGugUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 105967 0.8 0.144788
Target:  5'- cGUCGGCgAGcCGCGCACGCCcgcGCGGCCg -3'
miRNA:   3'- -UAGCCGgUC-GUGUGUGCGG---UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 109540 0.66 0.800917
Target:  5'- -aCGGCguGCACgucgggcguuaugACACGCgGCcGCCUu -3'
miRNA:   3'- uaGCCGguCGUG-------------UGUGCGgUGuCGGA- -5'
1632 3' -60.1 NC_001347.2 + 110538 0.68 0.680629
Target:  5'- aAUCGGCC-GCgaauggaaGCGCGCGCCAUcauccGCCg -3'
miRNA:   3'- -UAGCCGGuCG--------UGUGUGCGGUGu----CGGa -5'
1632 3' -60.1 NC_001347.2 + 113993 0.66 0.793093
Target:  5'- -cCGcCCAcGUAgACcgGCGCCACAGCCUg -3'
miRNA:   3'- uaGCcGGU-CGUgUG--UGCGGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 114412 0.67 0.75615
Target:  5'- -gCGGCCGuGUucgaugaaACGCGCGCCGCccgucucAGCCa -3'
miRNA:   3'- uaGCCGGU-CG--------UGUGUGCGGUG-------UCGGa -5'
1632 3' -60.1 NC_001347.2 + 114607 0.67 0.757073
Target:  5'- -gCGGCCuucuuCACGCGCCACugggguGCCg -3'
miRNA:   3'- uaGCCGGucgu-GUGUGCGGUGu-----CGGa -5'
1632 3' -60.1 NC_001347.2 + 115285 0.69 0.64125
Target:  5'- -aCGGCCAGCuC-CACGCuauaCAUAGCCc -3'
miRNA:   3'- uaGCCGGUCGuGuGUGCG----GUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 116630 0.66 0.809475
Target:  5'- aGUCGGCCAcgggguugcucuuGCugagcugcaugaGCACgGCGCCGCcGCCg -3'
miRNA:   3'- -UAGCCGGU-------------CG------------UGUG-UGCGGUGuCGGa -5'
1632 3' -60.1 NC_001347.2 + 117382 0.67 0.757073
Target:  5'- cGUCGGCCAG-ACGCG-GCaACAGCUg -3'
miRNA:   3'- -UAGCCGGUCgUGUGUgCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 117477 0.76 0.282362
Target:  5'- -gCGGCCAGCAgACAgGCgGCGGCUUc -3'
miRNA:   3'- uaGCCGGUCGUgUGUgCGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 117807 0.68 0.67082
Target:  5'- -aCGGCCgcucGGCGCACuGCGCCA--GCCa -3'
miRNA:   3'- uaGCCGG----UCGUGUG-UGCGGUguCGGa -5'
1632 3' -60.1 NC_001347.2 + 124247 0.67 0.719409
Target:  5'- -gCGGCCuacGUGCACGCGCC-CGGUa- -3'
miRNA:   3'- uaGCCGGu--CGUGUGUGCGGuGUCGga -5'
1632 3' -60.1 NC_001347.2 + 130086 0.69 0.64125
Target:  5'- cUCGcaacCCAuGCAC-CGCGCCAUGGCCUa -3'
miRNA:   3'- uAGCc---GGU-CGUGuGUGCGGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 130408 0.7 0.582116
Target:  5'- -aCcGCCAGCAacCACGCCACuGCCg -3'
miRNA:   3'- uaGcCGGUCGUguGUGCGGUGuCGGa -5'
1632 3' -60.1 NC_001347.2 + 135173 1.06 0.002564
Target:  5'- cAUCGGCCAGCACACACGCCACAGCCUg -3'
miRNA:   3'- -UAGCCGGUCGUGUGUGCGGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 136097 0.68 0.660983
Target:  5'- -aCGGaCCGGCGC-CGgGCCuCGGCCg -3'
miRNA:   3'- uaGCC-GGUCGUGuGUgCGGuGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 136496 0.68 0.660983
Target:  5'- -cUGGCCcGCGCAUGCGCCccGgGGCCc -3'
miRNA:   3'- uaGCCGGuCGUGUGUGCGG--UgUCGGa -5'
1632 3' -60.1 NC_001347.2 + 140038 0.69 0.621491
Target:  5'- cGUCGGCgCGGCAUcccaGCGCCggcgguACGGCCa -3'
miRNA:   3'- -UAGCCG-GUCGUGug--UGCGG------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 142641 0.66 0.77442
Target:  5'- -aCcGCCAGCAaACGCcgcgacaacggccGCCGCAGCCa -3'
miRNA:   3'- uaGcCGGUCGUgUGUG-------------CGGUGUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.