miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 228711 0.69 0.601762
Target:  5'- uGUCGGcCCAGuCGcCAC-CGCCGCGGCg- -3'
miRNA:   3'- -UAGCC-GGUC-GU-GUGuGCGGUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 228191 0.78 0.19842
Target:  5'- cUCGGCCGGCAucCACGCGCCACGuucaccgcguuguGCCc -3'
miRNA:   3'- uAGCCGGUCGU--GUGUGCGGUGU-------------CGGa -5'
1632 3' -60.1 NC_001347.2 + 222792 0.69 0.611619
Target:  5'- uGUCGGCCgacaaaucgcAGCugucuuCGC-CGCCGCAGCUg -3'
miRNA:   3'- -UAGCCGG----------UCGu-----GUGuGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 221029 0.67 0.747791
Target:  5'- uUUGGCgCGuGCACGCgaACGCCGCAccGCCc -3'
miRNA:   3'- uAGCCG-GU-CGUGUG--UGCGGUGU--CGGa -5'
1632 3' -60.1 NC_001347.2 + 209767 0.68 0.690399
Target:  5'- -aCGGCCAGUuCuuGCGCUuCGGCCg -3'
miRNA:   3'- uaGCCGGUCGuGugUGCGGuGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 203324 0.66 0.809475
Target:  5'- -cCGGCCcuuGCGCcgcuuggcuuucuACGCGCCGCgAGCUc -3'
miRNA:   3'- uaGCCGGu--CGUG-------------UGUGCGGUG-UCGGa -5'
1632 3' -60.1 NC_001347.2 + 200257 0.74 0.359711
Target:  5'- gAUCuGGCUAGC-CugGCGCuCACGGCCg -3'
miRNA:   3'- -UAG-CCGGUCGuGugUGCG-GUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 197723 0.69 0.591925
Target:  5'- cUCgGGCCuGCgACGCgACGCCgACGGCCa -3'
miRNA:   3'- uAG-CCGGuCG-UGUG-UGCGG-UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 195647 0.68 0.680629
Target:  5'- -cCGGCCuGUuguguCGCACGCCcgaggaucugGCGGCCg -3'
miRNA:   3'- uaGCCGGuCGu----GUGUGCGG----------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 193435 0.7 0.562604
Target:  5'- cAUUGGCaCGGUcuCGCACGCCACcuGCCg -3'
miRNA:   3'- -UAGCCG-GUCGu-GUGUGCGGUGu-CGGa -5'
1632 3' -60.1 NC_001347.2 + 193164 0.67 0.709798
Target:  5'- cUCuGCCuGgGCACGCGCguCGGCCg -3'
miRNA:   3'- uAGcCGGuCgUGUGUGCGguGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 187518 0.69 0.591925
Target:  5'- uGUCGGUgcGCgagACGCugGUCACAGCCa -3'
miRNA:   3'- -UAGCCGguCG---UGUGugCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 185041 0.75 0.322814
Target:  5'- uUCGGCCGGC--GCGCGCUugAGCUg -3'
miRNA:   3'- uAGCCGGUCGugUGUGCGGugUCGGa -5'
1632 3' -60.1 NC_001347.2 + 183477 0.66 0.775321
Target:  5'- cUCGGCCucGGgAgACGCGC-GCAGCCc -3'
miRNA:   3'- uAGCCGG--UCgUgUGUGCGgUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 174725 0.66 0.766253
Target:  5'- --gGGCCuGCGCaacuACGCGCCGCuGCg- -3'
miRNA:   3'- uagCCGGuCGUG----UGUGCGGUGuCGga -5'
1632 3' -60.1 NC_001347.2 + 173965 0.71 0.486769
Target:  5'- -gCGGCUAGaGCGCGgGCCGCGuGCCUg -3'
miRNA:   3'- uaGCCGGUCgUGUGUgCGGUGU-CGGA- -5'
1632 3' -60.1 NC_001347.2 + 172046 0.67 0.719409
Target:  5'- cAUC-GCCAGCGCGCgcugggaaGCGCUGCGcGCCg -3'
miRNA:   3'- -UAGcCGGUCGUGUG--------UGCGGUGU-CGGa -5'
1632 3' -60.1 NC_001347.2 + 169123 0.73 0.383222
Target:  5'- nUCGGCCGcGCGCGcCGCGCUGCAGUg- -3'
miRNA:   3'- uAGCCGGU-CGUGU-GUGCGGUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 169081 0.78 0.215705
Target:  5'- cUCGGCCAGCACGCgcugccugcucgaaaGCGUguaCACGGCCUc -3'
miRNA:   3'- uAGCCGGUCGUGUG---------------UGCG---GUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 168633 0.68 0.664921
Target:  5'- cUCGGCaacgcacccacgaaGGCGCGCACGCgcuCGCGGUCa -3'
miRNA:   3'- uAGCCGg-------------UCGUGUGUGCG---GUGUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.