miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 168194 0.66 0.796584
Target:  5'- uUCGGCCacGGCGCgACaauugacguagggccGCGCCuccgugGCAGCCg -3'
miRNA:   3'- uAGCCGG--UCGUG-UG---------------UGCGG------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 167587 0.68 0.651123
Target:  5'- -cUGGCCGGCugGaucaGCGCCAUuugugcguaGGCCg -3'
miRNA:   3'- uaGCCGGUCGugUg---UGCGGUG---------UCGGa -5'
1632 3' -60.1 NC_001347.2 + 166277 0.67 0.757073
Target:  5'- -aCGGCUAGCGCGCguuGCaCCGCGGUa- -3'
miRNA:   3'- uaGCCGGUCGUGUG---UGcGGUGUCGga -5'
1632 3' -60.1 NC_001347.2 + 164828 0.68 0.690399
Target:  5'- --gGGCCGGCAgGgCcccuuCGCCGCAGCUg -3'
miRNA:   3'- uagCCGGUCGUgU-Gu----GCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 163612 0.68 0.690399
Target:  5'- --aGGCCAGUgucaGCGCcgaGCCGCGGCUg -3'
miRNA:   3'- uagCCGGUCG----UGUGug-CGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 162092 0.67 0.757073
Target:  5'- gAUCGGCCucgucgcugAGCGCuuucCGgGCCGCgucGGCCUg -3'
miRNA:   3'- -UAGCCGG---------UCGUGu---GUgCGGUG---UCGGA- -5'
1632 3' -60.1 NC_001347.2 + 159289 0.69 0.591925
Target:  5'- -cUGG-CGGCGcCGgGCGCCACGGCCa -3'
miRNA:   3'- uaGCCgGUCGU-GUgUGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 158906 0.7 0.532733
Target:  5'- uGUUGGCCaccaugcugagcaAGUACACGCGCaugucCAGCCUg -3'
miRNA:   3'- -UAGCCGG-------------UCGUGUGUGCGgu---GUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 158711 0.69 0.621491
Target:  5'- cGUCGGCggccacauugugCAGCAgGCGCGCgGCGGUUUa -3'
miRNA:   3'- -UAGCCG------------GUCGUgUGUGCGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 158039 0.67 0.72895
Target:  5'- -cCGGaCAGCAgGCGCGUCACguagAGCCc -3'
miRNA:   3'- uaGCCgGUCGUgUGUGCGGUG----UCGGa -5'
1632 3' -60.1 NC_001347.2 + 157207 0.69 0.631371
Target:  5'- gAUCGGCC-GCGgu-GCGCUGCAGCCg -3'
miRNA:   3'- -UAGCCGGuCGUgugUGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 156966 0.68 0.680629
Target:  5'- -gUGGCgAGCGCGCuccgggccaucGCGaCCGCAGUCUg -3'
miRNA:   3'- uaGCCGgUCGUGUG-----------UGC-GGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 154820 0.72 0.45957
Target:  5'- -aUGGCCAGCggcgcGCACAguCGCCGCAGUUg -3'
miRNA:   3'- uaGCCGGUCG-----UGUGU--GCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 153765 0.73 0.383222
Target:  5'- gGUCGcGCCAGUGCGCcgucgACGCCGCucaGGCCg -3'
miRNA:   3'- -UAGC-CGGUCGUGUG-----UGCGGUG---UCGGa -5'
1632 3' -60.1 NC_001347.2 + 151359 0.71 0.496004
Target:  5'- cGUgGGCCcagccuGGCGCACuACGUgACGGCCUg -3'
miRNA:   3'- -UAgCCGG------UCGUGUG-UGCGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 149977 0.68 0.67082
Target:  5'- -cCGGCCAGCACGgC-CGCCACcaaGGUg- -3'
miRNA:   3'- uaGCCGGUCGUGU-GuGCGGUG---UCGga -5'
1632 3' -60.1 NC_001347.2 + 142641 0.66 0.77442
Target:  5'- -aCcGCCAGCAaACGCcgcgacaacggccGCCGCAGCCa -3'
miRNA:   3'- uaGcCGGUCGUgUGUG-------------CGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 140038 0.69 0.621491
Target:  5'- cGUCGGCgCGGCAUcccaGCGCCggcgguACGGCCa -3'
miRNA:   3'- -UAGCCG-GUCGUGug--UGCGG------UGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 136496 0.68 0.660983
Target:  5'- -cUGGCCcGCGCAUGCGCCccGgGGCCc -3'
miRNA:   3'- uaGCCGGuCGUGUGUGCGG--UgUCGGa -5'
1632 3' -60.1 NC_001347.2 + 136097 0.68 0.660983
Target:  5'- -aCGGaCCGGCGC-CGgGCCuCGGCCg -3'
miRNA:   3'- uaGCC-GGUCGUGuGUgCGGuGUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.