miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 3' -60.1 NC_001347.2 + 209767 0.68 0.690399
Target:  5'- -aCGGCCAGUuCuuGCGCUuCGGCCg -3'
miRNA:   3'- uaGCCGGUCGuGugUGCGGuGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 163612 0.68 0.690399
Target:  5'- --aGGCCAGUgucaGCGCcgaGCCGCGGCUg -3'
miRNA:   3'- uagCCGGUCG----UGUGug-CGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 156966 0.68 0.680629
Target:  5'- -gUGGCgAGCGCGCuccgggccaucGCGaCCGCAGUCUg -3'
miRNA:   3'- uaGCCGgUCGUGUG-----------UGC-GGUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 63490 0.67 0.719409
Target:  5'- --gGGCCAgcagcucaucacGCagacgaugccGCACACGCCACAGgCCg -3'
miRNA:   3'- uagCCGGU------------CG----------UGUGUGCGGUGUC-GGa -5'
1632 3' -60.1 NC_001347.2 + 172046 0.67 0.719409
Target:  5'- cAUC-GCCAGCGCGCgcugggaaGCGCUGCGcGCCg -3'
miRNA:   3'- -UAGcCGGUCGUGUG--------UGCGGUGU-CGGa -5'
1632 3' -60.1 NC_001347.2 + 36770 0.67 0.747791
Target:  5'- -cUGGCaGGgACACGCGCUACguAGCCg -3'
miRNA:   3'- uaGCCGgUCgUGUGUGCGGUG--UCGGa -5'
1632 3' -60.1 NC_001347.2 + 221029 0.67 0.747791
Target:  5'- uUUGGCgCGuGCACGCgaACGCCGCAccGCCc -3'
miRNA:   3'- uAGCCG-GU-CGUGUG--UGCGGUGU--CGGa -5'
1632 3' -60.1 NC_001347.2 + 68739 0.67 0.747791
Target:  5'- --aGGCCguggAGCGaguGC-CGCCGCAGCCg -3'
miRNA:   3'- uagCCGG----UCGUg--UGuGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 31318 0.67 0.747791
Target:  5'- --aGGUCGGCAC-CGCGCCACcggaaGGaCCUc -3'
miRNA:   3'- uagCCGGUCGUGuGUGCGGUG-----UC-GGA- -5'
1632 3' -60.1 NC_001347.2 + 88628 0.67 0.746857
Target:  5'- -gCGGCCuGCAC-CGCggcuugaGCgGCGGCCUg -3'
miRNA:   3'- uaGCCGGuCGUGuGUG-------CGgUGUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 47313 0.67 0.738414
Target:  5'- -aCGGUuuaCAGguCGCACGCCAguCAGCUa -3'
miRNA:   3'- uaGCCG---GUCguGUGUGCGGU--GUCGGa -5'
1632 3' -60.1 NC_001347.2 + 63094 0.67 0.746857
Target:  5'- cUCGGCaAGUGCcgccgugGC-CGCCGCGGCCg -3'
miRNA:   3'- uAGCCGgUCGUG-------UGuGCGGUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 158039 0.67 0.72895
Target:  5'- -cCGGaCAGCAgGCGCGUCACguagAGCCc -3'
miRNA:   3'- uaGCCgGUCGUgUGUGCGGUG----UCGGa -5'
1632 3' -60.1 NC_001347.2 + 18820 0.67 0.737471
Target:  5'- -cUGGCaCGGCGCacugggcaccaucACACGCuCGCAGCUa -3'
miRNA:   3'- uaGCCG-GUCGUG-------------UGUGCG-GUGUCGGa -5'
1632 3' -60.1 NC_001347.2 + 104633 0.67 0.72895
Target:  5'- -gCGGCCA-CACACAaccCCugGGCCUc -3'
miRNA:   3'- uaGCCGGUcGUGUGUgc-GGugUCGGA- -5'
1632 3' -60.1 NC_001347.2 + 195647 0.68 0.680629
Target:  5'- -cCGGCCuGUuguguCGCACGCCcgaggaucugGCGGCCg -3'
miRNA:   3'- uaGCCGGuCGu----GUGUGCGG----------UGUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.