miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 5' -66.7 NC_001347.2 + 84321 0.66 0.582596
Target:  5'- gGAGGCGgCGGgcuuuuuugUCCCGGgggUGGGUGGa -3'
miRNA:   3'- gCUCCGCgGCU---------GGGGCCg--ACCCGCCg -5'
1632 5' -66.7 NC_001347.2 + 183392 0.66 0.577118
Target:  5'- --cGGCGCacagauccaccgccuCGACCgUGGUgaaGGGCGGUg -3'
miRNA:   3'- gcuCCGCG---------------GCUGGgGCCGa--CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 198902 0.66 0.573472
Target:  5'- aGAGcGCGCCG-CgCgaGGUguagUGGGCGGUa -3'
miRNA:   3'- gCUC-CGCGGCuGgGg-CCG----ACCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 155105 0.66 0.573472
Target:  5'- gCGGGGUGuuGAggauuuaCCUGGUaUGaGGCGGCc -3'
miRNA:   3'- -GCUCCGCggCUg------GGGCCG-AC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 81480 0.66 0.564382
Target:  5'- aGuGGCGUCGuCgCUCGGC-GGGUGcGCa -3'
miRNA:   3'- gCuCCGCGGCuG-GGGCCGaCCCGC-CG- -5'
1632 5' -66.7 NC_001347.2 + 31391 0.66 0.55533
Target:  5'- uGAGGCGgUGGCUgcgccuccucgUCGGcCUGGGCuGCu -3'
miRNA:   3'- gCUCCGCgGCUGG-----------GGCC-GACCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 1843 0.66 0.55533
Target:  5'- --cGGCGCCGcACCCCGcgucGCUGcuGaCGGCc -3'
miRNA:   3'- gcuCCGCGGC-UGGGGC----CGACc-C-GCCG- -5'
1632 5' -66.7 NC_001347.2 + 29122 0.66 0.55533
Target:  5'- cCGAGGCGCgcugCGugCuCCGaucGGGCGGUc -3'
miRNA:   3'- -GCUCCGCG----GCugG-GGCcgaCCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 190142 0.66 0.54632
Target:  5'- aCGGGGcCGCa-ACCggguucugCCGGCaUGGGgGGCg -3'
miRNA:   3'- -GCUCC-GCGgcUGG--------GGCCG-ACCCgCCG- -5'
1632 5' -66.7 NC_001347.2 + 148835 0.66 0.54632
Target:  5'- --uGGCGCgaGACCCUGG-UGGGUcGCg -3'
miRNA:   3'- gcuCCGCGg-CUGGGGCCgACCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 143474 0.66 0.545422
Target:  5'- -cGGGCGCUGauggccuacucgcGCCagCCGGaCcGGGCGGCc -3'
miRNA:   3'- gcUCCGCGGC-------------UGG--GGCC-GaCCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 78413 0.66 0.545422
Target:  5'- -cGGGCugcugccGCCGcCaCCCGGCccGGCGGCg -3'
miRNA:   3'- gcUCCG-------CGGCuG-GGGCCGacCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 77054 0.66 0.537359
Target:  5'- gCGuGcCGCCGGCCUcggacgaagCGGCaGcGGCGGCa -3'
miRNA:   3'- -GCuCcGCGGCUGGG---------GCCGaC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 165620 0.67 0.528448
Target:  5'- aGAccGGCaGCCGcCCgCCGGC-GGGCaGCu -3'
miRNA:   3'- gCU--CCG-CGGCuGG-GGCCGaCCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 128710 0.67 0.519593
Target:  5'- --cGGCGCCGGugacccgccCCCCGGCa--GCGGUc -3'
miRNA:   3'- gcuCCGCGGCU---------GGGGCCGaccCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 194019 0.67 0.519593
Target:  5'- gCGGcuGGCGCgCGACCUCaggGGCUucgugcgcgugGGGCuGGCg -3'
miRNA:   3'- -GCU--CCGCG-GCUGGGG---CCGA-----------CCCG-CCG- -5'
1632 5' -66.7 NC_001347.2 + 136041 0.67 0.517828
Target:  5'- --cGGUGCCcggcccacGGCCCCGGauggugcuccaGGGCGGUg -3'
miRNA:   3'- gcuCCGCGG--------CUGGGGCCga---------CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 81886 0.67 0.502062
Target:  5'- aGAGGU-CCGGCCCCaGGUaGucgcguagcGGCGGCu -3'
miRNA:   3'- gCUCCGcGGCUGGGG-CCGaC---------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 13921 0.67 0.502062
Target:  5'- aCGGGGCGUCGgagaguauaaACUggggCgGGCgcgGGGUGGCg -3'
miRNA:   3'- -GCUCCGCGGC----------UGG----GgCCGa--CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 36382 0.67 0.484796
Target:  5'- aGGGGCaugCGGCCUuagCGGCUcGGGCuGGCg -3'
miRNA:   3'- gCUCCGcg-GCUGGG---GCCGA-CCCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.