Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1632 | 5' | -66.7 | NC_001347.2 | + | 128710 | 0.67 | 0.519593 |
Target: 5'- --cGGCGCCGGugacccgccCCCCGGCa--GCGGUc -3' miRNA: 3'- gcuCCGCGGCU---------GGGGCCGaccCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 194019 | 0.67 | 0.519593 |
Target: 5'- gCGGcuGGCGCgCGACCUCaggGGCUucgugcgcgugGGGCuGGCg -3' miRNA: 3'- -GCU--CCGCG-GCUGGGG---CCGA-----------CCCG-CCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 136041 | 0.67 | 0.517828 |
Target: 5'- --cGGUGCCcggcccacGGCCCCGGauggugcuccaGGGCGGUg -3' miRNA: 3'- gcuCCGCGG--------CUGGGGCCga---------CCCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 144454 | 0.68 | 0.418829 |
Target: 5'- gGGGGCGaCGGCCCCGa--GGGCgaGGCu -3' miRNA: 3'- gCUCCGCgGCUGGGGCcgaCCCG--CCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 153232 | 0.68 | 0.426779 |
Target: 5'- uGAGGCGCgGGCgcgcgucggCCGGCgacGGCGGUu -3' miRNA: 3'- gCUCCGCGgCUGg--------GGCCGac-CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 142985 | 0.68 | 0.434817 |
Target: 5'- cCGAGGCGgaGGagCCGGCgGcGGCGGUg -3' miRNA: 3'- -GCUCCGCggCUggGGCCGaC-CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 1921 | 0.68 | 0.451153 |
Target: 5'- -uGGGCGCgGugCUgcccgcgcggUGGCUGGGCuGCg -3' miRNA: 3'- gcUCCGCGgCugGG----------GCCGACCCGcCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 156637 | 0.68 | 0.456119 |
Target: 5'- uGGcGGCGCCGcugccggGCCUCGGCcGccgccgccacccauGGCGGCg -3' miRNA: 3'- gCU-CCGCGGC-------UGGGGCCGaC--------------CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 112626 | 0.68 | 0.459446 |
Target: 5'- aGAGucGCGCCGACgguaauaggCCGGUgaugGuGGCGGCg -3' miRNA: 3'- gCUC--CGCGGCUGg--------GGCCGa---C-CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 30595 | 0.68 | 0.459446 |
Target: 5'- -cGGGCggcuuccugcgGCCGGCCgCGGUgccGGCGGCu -3' miRNA: 3'- gcUCCG-----------CGGCUGGgGCCGac-CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 76616 | 0.68 | 0.459446 |
Target: 5'- uCGcAGGCGgCGGCUgCGGCcGcGGCGGa -3' miRNA: 3'- -GC-UCCGCgGCUGGgGCCGaC-CCGCCg -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 1414 | 0.68 | 0.459446 |
Target: 5'- aCGAGGUggaccccgcaGCCGACCCgacGUUGGGCGa- -3' miRNA: 3'- -GCUCCG----------CGGCUGGGgc-CGACCCGCcg -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 1707 | 0.68 | 0.467819 |
Target: 5'- gCGAcGGCGCuCGgacgggagcuGCgCCGGCggUGGGcCGGCa -3' miRNA: 3'- -GCU-CCGCG-GC----------UGgGGCCG--ACCC-GCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 135778 | 0.69 | 0.403204 |
Target: 5'- -aGGGCGCgGACCCCGGgUcccguccauuccGcGGCGGg -3' miRNA: 3'- gcUCCGCGgCUGGGGCCgA------------C-CCGCCg -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 172695 | 0.69 | 0.403204 |
Target: 5'- gGAGcCGCCGACgCUGGCgcuGCGGCu -3' miRNA: 3'- gCUCcGCGGCUGgGGCCGaccCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 67009 | 0.69 | 0.394768 |
Target: 5'- uGGGGgGCCaACgCCGGCUGcggagacagcugcGGCGGUc -3' miRNA: 3'- gCUCCgCGGcUGgGGCCGAC-------------CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 93197 | 0.69 | 0.406299 |
Target: 5'- -uGGGCGCCGAgCgCUCGcGCUGGcgacgagcucgcugaGCGGCa -3' miRNA: 3'- gcUCCGCGGCU-G-GGGC-CGACC---------------CGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 182187 | 0.69 | 0.41097 |
Target: 5'- uGuGG-GCCGGCCCUcggGGUgcGGGUGGCg -3' miRNA: 3'- gCuCCgCGGCUGGGG---CCGa-CCCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 62761 | 0.69 | 0.41097 |
Target: 5'- aCGAgcGGCgGCCGACCCCGccGUUGcGGCcGCc -3' miRNA: 3'- -GCU--CCG-CGGCUGGGGC--CGAC-CCGcCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 107322 | 0.69 | 0.387952 |
Target: 5'- cCGAGGCGCCagccGACCCaguGGCguuucgccuGCGGCu -3' miRNA: 3'- -GCUCCGCGG----CUGGGg--CCGacc------CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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