Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1632 | 5' | -66.7 | NC_001347.2 | + | 66765 | 0.67 | 0.473726 |
Target: 5'- -cGGGC-CCGACCCCgacguccgcccgacGGUgGuGGCGGCg -3' miRNA: 3'- gcUCCGcGGCUGGGG--------------CCGaC-CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 156765 | 0.67 | 0.47288 |
Target: 5'- gGAGGaguuGCUGGCUCUGGCgggagaagggaaGGCGGCa -3' miRNA: 3'- gCUCCg---CGGCUGGGGCCGac----------CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 39520 | 0.67 | 0.47627 |
Target: 5'- gGGGGCGCggCGACaugCCGuugcGCUGGGCcaugGGCg -3' miRNA: 3'- gCUCCGCG--GCUGg--GGC----CGACCCG----CCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 198902 | 0.66 | 0.573472 |
Target: 5'- aGAGcGCGCCG-CgCgaGGUguagUGGGCGGUa -3' miRNA: 3'- gCUC-CGCGGCuGgGg-CCG----ACCCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 84321 | 0.66 | 0.582596 |
Target: 5'- gGAGGCGgCGGgcuuuuuugUCCCGGgggUGGGUGGa -3' miRNA: 3'- gCUCCGCgGCU---------GGGGCCg--ACCCGCCg -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 183392 | 0.66 | 0.577118 |
Target: 5'- --cGGCGCacagauccaccgccuCGACCgUGGUgaaGGGCGGUg -3' miRNA: 3'- gcuCCGCG---------------GCUGGgGCCGa--CCCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 155105 | 0.66 | 0.573472 |
Target: 5'- gCGGGGUGuuGAggauuuaCCUGGUaUGaGGCGGCc -3' miRNA: 3'- -GCUCCGCggCUg------GGGCCG-AC-CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 81480 | 0.66 | 0.564382 |
Target: 5'- aGuGGCGUCGuCgCUCGGC-GGGUGcGCa -3' miRNA: 3'- gCuCCGCGGCuG-GGGCCGaCCCGC-CG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 29122 | 0.66 | 0.55533 |
Target: 5'- cCGAGGCGCgcugCGugCuCCGaucGGGCGGUc -3' miRNA: 3'- -GCUCCGCG----GCugG-GGCcgaCCCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 1843 | 0.66 | 0.55533 |
Target: 5'- --cGGCGCCGcACCCCGcgucGCUGcuGaCGGCc -3' miRNA: 3'- gcuCCGCGGC-UGGGGC----CGACc-C-GCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 31391 | 0.66 | 0.55533 |
Target: 5'- uGAGGCGgUGGCUgcgccuccucgUCGGcCUGGGCuGCu -3' miRNA: 3'- gCUCCGCgGCUGG-----------GGCC-GACCCGcCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 148835 | 0.66 | 0.54632 |
Target: 5'- --uGGCGCgaGACCCUGG-UGGGUcGCg -3' miRNA: 3'- gcuCCGCGg-CUGGGGCCgACCCGcCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 78413 | 0.66 | 0.545422 |
Target: 5'- -cGGGCugcugccGCCGcCaCCCGGCccGGCGGCg -3' miRNA: 3'- gcUCCG-------CGGCuG-GGGCCGacCCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 143474 | 0.66 | 0.545422 |
Target: 5'- -cGGGCGCUGauggccuacucgcGCCagCCGGaCcGGGCGGCc -3' miRNA: 3'- gcUCCGCGGC-------------UGG--GGCC-GaCCCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 77054 | 0.66 | 0.537359 |
Target: 5'- gCGuGcCGCCGGCCUcggacgaagCGGCaGcGGCGGCa -3' miRNA: 3'- -GCuCcGCGGCUGGG---------GCCGaC-CCGCCG- -5' |
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1632 | 5' | -66.7 | NC_001347.2 | + | 190142 | 0.66 | 0.54632 |
Target: 5'- aCGGGGcCGCa-ACCggguucugCCGGCaUGGGgGGCg -3' miRNA: 3'- -GCUCC-GCGgcUGG--------GGCCG-ACCCgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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