miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 5' -66.7 NC_001347.2 + 135208 1.09 0.000609
Target:  5'- cCGAGGCGCCGACCCCGGCUGGGCGGCc -3'
miRNA:   3'- -GCUCCGCGGCUGGGGCCGACCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 142562 0.74 0.193229
Target:  5'- aCGAGGCuGgCGGCgUCGGCgggagcagcggGGGCGGCg -3'
miRNA:   3'- -GCUCCG-CgGCUGgGGCCGa----------CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 155557 0.74 0.197613
Target:  5'- aCGAGGaCGCgGAgCCCgCGGCUGGuacgaGCGGUg -3'
miRNA:   3'- -GCUCC-GCGgCU-GGG-GCCGACC-----CGCCG- -5'
1632 5' -66.7 NC_001347.2 + 142429 0.74 0.202084
Target:  5'- aGuGGCGUCGGCgcggcgUCCGGCgucggGGGUGGCg -3'
miRNA:   3'- gCuCCGCGGCUG------GGGCCGa----CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 200108 0.73 0.241087
Target:  5'- uGAGG-GCCGGCUCCGGC-GGGCa-- -3'
miRNA:   3'- gCUCCgCGGCUGGGGCCGaCCCGccg -5'
1632 5' -66.7 NC_001347.2 + 136103 0.72 0.25726
Target:  5'- --cGGCGCCgGGCCUCGGCcggggagggUGGGgGGUa -3'
miRNA:   3'- gcuCCGCGG-CUGGGGCCG---------ACCCgCCG- -5'
1632 5' -66.7 NC_001347.2 + 182274 0.72 0.25726
Target:  5'- aGAGGgucaCGCUGACCaugCGGCgucguugccgGGGCGGCu -3'
miRNA:   3'- gCUCC----GCGGCUGGg--GCCGa---------CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 118524 0.72 0.262282
Target:  5'- --uGGCGCaGGCCCuCGGCguacugcaggcugUGGGUGGCg -3'
miRNA:   3'- gcuCCGCGgCUGGG-GCCG-------------ACCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 140616 0.72 0.268528
Target:  5'- gGGGGC-CCGAgCgaCGGuCUGGGUGGCg -3'
miRNA:   3'- gCUCCGcGGCUgGg-GCC-GACCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 5577 0.71 0.304715
Target:  5'- gGGGGCGUgccccgcaGACCCCGGUuaaUGcGGUGGUg -3'
miRNA:   3'- gCUCCGCGg-------CUGGGGCCG---AC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 150583 0.71 0.311099
Target:  5'- ---aGCGUCGGCUCCGGCaguaGuGGCGGCg -3'
miRNA:   3'- gcucCGCGGCUGGGGCCGa---C-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 1600 0.7 0.330855
Target:  5'- gCGAGGUGgugCGGCUguaccgcugcaaCCGGCUGGGCgugGGCa -3'
miRNA:   3'- -GCUCCGCg--GCUGG------------GGCCGACCCG---CCG- -5'
1632 5' -66.7 NC_001347.2 + 88679 0.7 0.358609
Target:  5'- --uGGCGCCGGCgcgCCCuGCUGggacgacgcaauGGCGGCg -3'
miRNA:   3'- gcuCCGCGGCUG---GGGcCGAC------------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 75405 0.7 0.365798
Target:  5'- gCGGGaGCGgCGGCCgUGGC--GGCGGCa -3'
miRNA:   3'- -GCUC-CGCgGCUGGgGCCGacCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 207143 0.69 0.38047
Target:  5'- aGGGGUGUuuggCGAgCCCGGauccGGGCGGUc -3'
miRNA:   3'- gCUCCGCG----GCUgGGGCCga--CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 107322 0.69 0.387952
Target:  5'- cCGAGGCGCCagccGACCCaguGGCguuucgccuGCGGCu -3'
miRNA:   3'- -GCUCCGCGG----CUGGGg--CCGacc------CGCCG- -5'
1632 5' -66.7 NC_001347.2 + 67009 0.69 0.394768
Target:  5'- uGGGGgGCCaACgCCGGCUGcggagacagcugcGGCGGUc -3'
miRNA:   3'- gCUCCgCGGcUGgGGCCGAC-------------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 172695 0.69 0.403204
Target:  5'- gGAGcCGCCGACgCUGGCgcuGCGGCu -3'
miRNA:   3'- gCUCcGCGGCUGgGGCCGaccCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 135778 0.69 0.403204
Target:  5'- -aGGGCGCgGACCCCGGgUcccguccauuccGcGGCGGg -3'
miRNA:   3'- gcUCCGCGgCUGGGGCCgA------------C-CCGCCg -5'
1632 5' -66.7 NC_001347.2 + 93197 0.69 0.406299
Target:  5'- -uGGGCGCCGAgCgCUCGcGCUGGcgacgagcucgcugaGCGGCa -3'
miRNA:   3'- gcUCCGCGGCU-G-GGGC-CGACC---------------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.