miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 5' -66.7 NC_001347.2 + 39520 0.67 0.47627
Target:  5'- gGGGGCGCggCGACaugCCGuugcGCUGGGCcaugGGCg -3'
miRNA:   3'- gCUCCGCG--GCUGg--GGC----CGACCCG----CCG- -5'
1632 5' -66.7 NC_001347.2 + 66765 0.67 0.473726
Target:  5'- -cGGGC-CCGACCCCgacguccgcccgacGGUgGuGGCGGCg -3'
miRNA:   3'- gcUCCGcGGCUGGGG--------------CCGaC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 156765 0.67 0.47288
Target:  5'- gGAGGaguuGCUGGCUCUGGCgggagaagggaaGGCGGCa -3'
miRNA:   3'- gCUCCg---CGGCUGGGGCCGac----------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 1707 0.68 0.467819
Target:  5'- gCGAcGGCGCuCGgacgggagcuGCgCCGGCggUGGGcCGGCa -3'
miRNA:   3'- -GCU-CCGCG-GC----------UGgGGCCG--ACCC-GCCG- -5'
1632 5' -66.7 NC_001347.2 + 112626 0.68 0.459446
Target:  5'- aGAGucGCGCCGACgguaauaggCCGGUgaugGuGGCGGCg -3'
miRNA:   3'- gCUC--CGCGGCUGg--------GGCCGa---C-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 30595 0.68 0.459446
Target:  5'- -cGGGCggcuuccugcgGCCGGCCgCGGUgccGGCGGCu -3'
miRNA:   3'- gcUCCG-----------CGGCUGGgGCCGac-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 76616 0.68 0.459446
Target:  5'- uCGcAGGCGgCGGCUgCGGCcGcGGCGGa -3'
miRNA:   3'- -GC-UCCGCgGCUGGgGCCGaC-CCGCCg -5'
1632 5' -66.7 NC_001347.2 + 1414 0.68 0.459446
Target:  5'- aCGAGGUggaccccgcaGCCGACCCgacGUUGGGCGa- -3'
miRNA:   3'- -GCUCCG----------CGGCUGGGgc-CGACCCGCcg -5'
1632 5' -66.7 NC_001347.2 + 156637 0.68 0.456119
Target:  5'- uGGcGGCGCCGcugccggGCCUCGGCcGccgccgccacccauGGCGGCg -3'
miRNA:   3'- gCU-CCGCGGC-------UGGGGCCGaC--------------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 1921 0.68 0.451153
Target:  5'- -uGGGCGCgGugCUgcccgcgcggUGGCUGGGCuGCg -3'
miRNA:   3'- gcUCCGCGgCugGG----------GCCGACCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 142985 0.68 0.434817
Target:  5'- cCGAGGCGgaGGagCCGGCgGcGGCGGUg -3'
miRNA:   3'- -GCUCCGCggCUggGGCCGaC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 153232 0.68 0.426779
Target:  5'- uGAGGCGCgGGCgcgcgucggCCGGCgacGGCGGUu -3'
miRNA:   3'- gCUCCGCGgCUGg--------GGCCGac-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 144454 0.68 0.418829
Target:  5'- gGGGGCGaCGGCCCCGa--GGGCgaGGCu -3'
miRNA:   3'- gCUCCGCgGCUGGGGCcgaCCCG--CCG- -5'
1632 5' -66.7 NC_001347.2 + 24345 0.69 0.41097
Target:  5'- cCGuGGUgGCCGugCUgGGCUGGGU-GCa -3'
miRNA:   3'- -GCuCCG-CGGCugGGgCCGACCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 62761 0.69 0.41097
Target:  5'- aCGAgcGGCgGCCGACCCCGccGUUGcGGCcGCc -3'
miRNA:   3'- -GCU--CCG-CGGCUGGGGC--CGAC-CCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 182187 0.69 0.41097
Target:  5'- uGuGG-GCCGGCCCUcggGGUgcGGGUGGCg -3'
miRNA:   3'- gCuCCgCGGCUGGGG---CCGa-CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 93197 0.69 0.406299
Target:  5'- -uGGGCGCCGAgCgCUCGcGCUGGcgacgagcucgcugaGCGGCa -3'
miRNA:   3'- gcUCCGCGGCU-G-GGGC-CGACC---------------CGCCG- -5'
1632 5' -66.7 NC_001347.2 + 172695 0.69 0.403204
Target:  5'- gGAGcCGCCGACgCUGGCgcuGCGGCu -3'
miRNA:   3'- gCUCcGCGGCUGgGGCCGaccCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 135778 0.69 0.403204
Target:  5'- -aGGGCGCgGACCCCGGgUcccguccauuccGcGGCGGg -3'
miRNA:   3'- gcUCCGCGgCUGGGGCCgA------------C-CCGCCg -5'
1632 5' -66.7 NC_001347.2 + 67009 0.69 0.394768
Target:  5'- uGGGGgGCCaACgCCGGCUGcggagacagcugcGGCGGUc -3'
miRNA:   3'- gCUCCgCGGcUGgGGCCGAC-------------CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.