miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 5' -66.7 NC_001347.2 + 1414 0.68 0.459446
Target:  5'- aCGAGGUggaccccgcaGCCGACCCgacGUUGGGCGa- -3'
miRNA:   3'- -GCUCCG----------CGGCUGGGgc-CGACCCGCcg -5'
1632 5' -66.7 NC_001347.2 + 1600 0.7 0.330855
Target:  5'- gCGAGGUGgugCGGCUguaccgcugcaaCCGGCUGGGCgugGGCa -3'
miRNA:   3'- -GCUCCGCg--GCUGG------------GGCCGACCCG---CCG- -5'
1632 5' -66.7 NC_001347.2 + 1707 0.68 0.467819
Target:  5'- gCGAcGGCGCuCGgacgggagcuGCgCCGGCggUGGGcCGGCa -3'
miRNA:   3'- -GCU-CCGCG-GC----------UGgGGCCG--ACCC-GCCG- -5'
1632 5' -66.7 NC_001347.2 + 1843 0.66 0.55533
Target:  5'- --cGGCGCCGcACCCCGcgucGCUGcuGaCGGCc -3'
miRNA:   3'- gcuCCGCGGC-UGGGGC----CGACc-C-GCCG- -5'
1632 5' -66.7 NC_001347.2 + 1921 0.68 0.451153
Target:  5'- -uGGGCGCgGugCUgcccgcgcggUGGCUGGGCuGCg -3'
miRNA:   3'- gcUCCGCGgCugGG----------GCCGACCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 5577 0.71 0.304715
Target:  5'- gGGGGCGUgccccgcaGACCCCGGUuaaUGcGGUGGUg -3'
miRNA:   3'- gCUCCGCGg-------CUGGGGCCG---AC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 13921 0.67 0.502062
Target:  5'- aCGGGGCGUCGgagaguauaaACUggggCgGGCgcgGGGUGGCg -3'
miRNA:   3'- -GCUCCGCGGC----------UGG----GgCCGa--CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 24345 0.69 0.41097
Target:  5'- cCGuGGUgGCCGugCUgGGCUGGGU-GCa -3'
miRNA:   3'- -GCuCCG-CGGCugGGgCCGACCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 29122 0.66 0.55533
Target:  5'- cCGAGGCGCgcugCGugCuCCGaucGGGCGGUc -3'
miRNA:   3'- -GCUCCGCG----GCugG-GGCcgaCCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 30595 0.68 0.459446
Target:  5'- -cGGGCggcuuccugcgGCCGGCCgCGGUgccGGCGGCu -3'
miRNA:   3'- gcUCCG-----------CGGCUGGgGCCGac-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 31391 0.66 0.55533
Target:  5'- uGAGGCGgUGGCUgcgccuccucgUCGGcCUGGGCuGCu -3'
miRNA:   3'- gCUCCGCgGCUGG-----------GGCC-GACCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 36382 0.67 0.484796
Target:  5'- aGGGGCaugCGGCCUuagCGGCUcGGGCuGGCg -3'
miRNA:   3'- gCUCCGcg-GCUGGG---GCCGA-CCCG-CCG- -5'
1632 5' -66.7 NC_001347.2 + 39520 0.67 0.47627
Target:  5'- gGGGGCGCggCGACaugCCGuugcGCUGGGCcaugGGCg -3'
miRNA:   3'- gCUCCGCG--GCUGg--GGC----CGACCCG----CCG- -5'
1632 5' -66.7 NC_001347.2 + 62761 0.69 0.41097
Target:  5'- aCGAgcGGCgGCCGACCCCGccGUUGcGGCcGCc -3'
miRNA:   3'- -GCU--CCG-CGGCUGGGGC--CGAC-CCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 66765 0.67 0.473726
Target:  5'- -cGGGC-CCGACCCCgacguccgcccgacGGUgGuGGCGGCg -3'
miRNA:   3'- gcUCCGcGGCUGGGG--------------CCGaC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 67009 0.69 0.394768
Target:  5'- uGGGGgGCCaACgCCGGCUGcggagacagcugcGGCGGUc -3'
miRNA:   3'- gCUCCgCGGcUGgGGCCGAC-------------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 75405 0.7 0.365798
Target:  5'- gCGGGaGCGgCGGCCgUGGC--GGCGGCa -3'
miRNA:   3'- -GCUC-CGCgGCUGGgGCCGacCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 76616 0.68 0.459446
Target:  5'- uCGcAGGCGgCGGCUgCGGCcGcGGCGGa -3'
miRNA:   3'- -GC-UCCGCgGCUGGgGCCGaC-CCGCCg -5'
1632 5' -66.7 NC_001347.2 + 77054 0.66 0.537359
Target:  5'- gCGuGcCGCCGGCCUcggacgaagCGGCaGcGGCGGCa -3'
miRNA:   3'- -GCuCcGCGGCUGGG---------GCCGaC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 78413 0.66 0.545422
Target:  5'- -cGGGCugcugccGCCGcCaCCCGGCccGGCGGCg -3'
miRNA:   3'- gcUCCG-------CGGCuG-GGGCCGacCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.