miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 5' -66.7 NC_001347.2 + 81480 0.66 0.564382
Target:  5'- aGuGGCGUCGuCgCUCGGC-GGGUGcGCa -3'
miRNA:   3'- gCuCCGCGGCuG-GGGCCGaCCCGC-CG- -5'
1632 5' -66.7 NC_001347.2 + 81886 0.67 0.502062
Target:  5'- aGAGGU-CCGGCCCCaGGUaGucgcguagcGGCGGCu -3'
miRNA:   3'- gCUCCGcGGCUGGGG-CCGaC---------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 84321 0.66 0.582596
Target:  5'- gGAGGCGgCGGgcuuuuuugUCCCGGgggUGGGUGGa -3'
miRNA:   3'- gCUCCGCgGCU---------GGGGCCg--ACCCGCCg -5'
1632 5' -66.7 NC_001347.2 + 88679 0.7 0.358609
Target:  5'- --uGGCGCCGGCgcgCCCuGCUGggacgacgcaauGGCGGCg -3'
miRNA:   3'- gcuCCGCGGCUG---GGGcCGAC------------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 93197 0.69 0.406299
Target:  5'- -uGGGCGCCGAgCgCUCGcGCUGGcgacgagcucgcugaGCGGCa -3'
miRNA:   3'- gcUCCGCGGCU-G-GGGC-CGACC---------------CGCCG- -5'
1632 5' -66.7 NC_001347.2 + 107322 0.69 0.387952
Target:  5'- cCGAGGCGCCagccGACCCaguGGCguuucgccuGCGGCu -3'
miRNA:   3'- -GCUCCGCGG----CUGGGg--CCGacc------CGCCG- -5'
1632 5' -66.7 NC_001347.2 + 112626 0.68 0.459446
Target:  5'- aGAGucGCGCCGACgguaauaggCCGGUgaugGuGGCGGCg -3'
miRNA:   3'- gCUC--CGCGGCUGg--------GGCCGa---C-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 118524 0.72 0.262282
Target:  5'- --uGGCGCaGGCCCuCGGCguacugcaggcugUGGGUGGCg -3'
miRNA:   3'- gcuCCGCGgCUGGG-GCCG-------------ACCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 128710 0.67 0.519593
Target:  5'- --cGGCGCCGGugacccgccCCCCGGCa--GCGGUc -3'
miRNA:   3'- gcuCCGCGGCU---------GGGGCCGaccCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 135208 1.09 0.000609
Target:  5'- cCGAGGCGCCGACCCCGGCUGGGCGGCc -3'
miRNA:   3'- -GCUCCGCGGCUGGGGCCGACCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 135778 0.69 0.403204
Target:  5'- -aGGGCGCgGACCCCGGgUcccguccauuccGcGGCGGg -3'
miRNA:   3'- gcUCCGCGgCUGGGGCCgA------------C-CCGCCg -5'
1632 5' -66.7 NC_001347.2 + 136041 0.67 0.517828
Target:  5'- --cGGUGCCcggcccacGGCCCCGGauggugcuccaGGGCGGUg -3'
miRNA:   3'- gcuCCGCGG--------CUGGGGCCga---------CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 136103 0.72 0.25726
Target:  5'- --cGGCGCCgGGCCUCGGCcggggagggUGGGgGGUa -3'
miRNA:   3'- gcuCCGCGG-CUGGGGCCG---------ACCCgCCG- -5'
1632 5' -66.7 NC_001347.2 + 140616 0.72 0.268528
Target:  5'- gGGGGC-CCGAgCgaCGGuCUGGGUGGCg -3'
miRNA:   3'- gCUCCGcGGCUgGg-GCC-GACCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 142429 0.74 0.202084
Target:  5'- aGuGGCGUCGGCgcggcgUCCGGCgucggGGGUGGCg -3'
miRNA:   3'- gCuCCGCGGCUG------GGGCCGa----CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 142562 0.74 0.193229
Target:  5'- aCGAGGCuGgCGGCgUCGGCgggagcagcggGGGCGGCg -3'
miRNA:   3'- -GCUCCG-CgGCUGgGGCCGa----------CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 142985 0.68 0.434817
Target:  5'- cCGAGGCGgaGGagCCGGCgGcGGCGGUg -3'
miRNA:   3'- -GCUCCGCggCUggGGCCGaC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 143474 0.66 0.545422
Target:  5'- -cGGGCGCUGauggccuacucgcGCCagCCGGaCcGGGCGGCc -3'
miRNA:   3'- gcUCCGCGGC-------------UGG--GGCC-GaCCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 144454 0.68 0.418829
Target:  5'- gGGGGCGaCGGCCCCGa--GGGCgaGGCu -3'
miRNA:   3'- gCUCCGCgGCUGGGGCcgaCCCG--CCG- -5'
1632 5' -66.7 NC_001347.2 + 148835 0.66 0.54632
Target:  5'- --uGGCGCgaGACCCUGG-UGGGUcGCg -3'
miRNA:   3'- gcuCCGCGg-CUGGGGCCgACCCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.