miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 5' -66.7 NC_001347.2 + 207143 0.69 0.38047
Target:  5'- aGGGGUGUuuggCGAgCCCGGauccGGGCGGUc -3'
miRNA:   3'- gCUCCGCG----GCUgGGGCCga--CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 200108 0.73 0.241087
Target:  5'- uGAGG-GCCGGCUCCGGC-GGGCa-- -3'
miRNA:   3'- gCUCCgCGGCUGGGGCCGaCCCGccg -5'
1632 5' -66.7 NC_001347.2 + 198902 0.66 0.573472
Target:  5'- aGAGcGCGCCG-CgCgaGGUguagUGGGCGGUa -3'
miRNA:   3'- gCUC-CGCGGCuGgGg-CCG----ACCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 194019 0.67 0.519593
Target:  5'- gCGGcuGGCGCgCGACCUCaggGGCUucgugcgcgugGGGCuGGCg -3'
miRNA:   3'- -GCU--CCGCG-GCUGGGG---CCGA-----------CCCG-CCG- -5'
1632 5' -66.7 NC_001347.2 + 190142 0.66 0.54632
Target:  5'- aCGGGGcCGCa-ACCggguucugCCGGCaUGGGgGGCg -3'
miRNA:   3'- -GCUCC-GCGgcUGG--------GGCCG-ACCCgCCG- -5'
1632 5' -66.7 NC_001347.2 + 183392 0.66 0.577118
Target:  5'- --cGGCGCacagauccaccgccuCGACCgUGGUgaaGGGCGGUg -3'
miRNA:   3'- gcuCCGCG---------------GCUGGgGCCGa--CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 182274 0.72 0.25726
Target:  5'- aGAGGgucaCGCUGACCaugCGGCgucguugccgGGGCGGCu -3'
miRNA:   3'- gCUCC----GCGGCUGGg--GCCGa---------CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 182187 0.69 0.41097
Target:  5'- uGuGG-GCCGGCCCUcggGGUgcGGGUGGCg -3'
miRNA:   3'- gCuCCgCGGCUGGGG---CCGa-CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 172695 0.69 0.403204
Target:  5'- gGAGcCGCCGACgCUGGCgcuGCGGCu -3'
miRNA:   3'- gCUCcGCGGCUGgGGCCGaccCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 165620 0.67 0.528448
Target:  5'- aGAccGGCaGCCGcCCgCCGGC-GGGCaGCu -3'
miRNA:   3'- gCU--CCG-CGGCuGG-GGCCGaCCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 156765 0.67 0.47288
Target:  5'- gGAGGaguuGCUGGCUCUGGCgggagaagggaaGGCGGCa -3'
miRNA:   3'- gCUCCg---CGGCUGGGGCCGac----------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 156637 0.68 0.456119
Target:  5'- uGGcGGCGCCGcugccggGCCUCGGCcGccgccgccacccauGGCGGCg -3'
miRNA:   3'- gCU-CCGCGGC-------UGGGGCCGaC--------------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 155557 0.74 0.197613
Target:  5'- aCGAGGaCGCgGAgCCCgCGGCUGGuacgaGCGGUg -3'
miRNA:   3'- -GCUCC-GCGgCU-GGG-GCCGACC-----CGCCG- -5'
1632 5' -66.7 NC_001347.2 + 155105 0.66 0.573472
Target:  5'- gCGGGGUGuuGAggauuuaCCUGGUaUGaGGCGGCc -3'
miRNA:   3'- -GCUCCGCggCUg------GGGCCG-AC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 153232 0.68 0.426779
Target:  5'- uGAGGCGCgGGCgcgcgucggCCGGCgacGGCGGUu -3'
miRNA:   3'- gCUCCGCGgCUGg--------GGCCGac-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 150583 0.71 0.311099
Target:  5'- ---aGCGUCGGCUCCGGCaguaGuGGCGGCg -3'
miRNA:   3'- gcucCGCGGCUGGGGCCGa---C-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 148835 0.66 0.54632
Target:  5'- --uGGCGCgaGACCCUGG-UGGGUcGCg -3'
miRNA:   3'- gcuCCGCGg-CUGGGGCCgACCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 144454 0.68 0.418829
Target:  5'- gGGGGCGaCGGCCCCGa--GGGCgaGGCu -3'
miRNA:   3'- gCUCCGCgGCUGGGGCcgaCCCG--CCG- -5'
1632 5' -66.7 NC_001347.2 + 143474 0.66 0.545422
Target:  5'- -cGGGCGCUGauggccuacucgcGCCagCCGGaCcGGGCGGCc -3'
miRNA:   3'- gcUCCGCGGC-------------UGG--GGCC-GaCCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 142985 0.68 0.434817
Target:  5'- cCGAGGCGgaGGagCCGGCgGcGGCGGUg -3'
miRNA:   3'- -GCUCCGCggCUggGGCCGaC-CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.