miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1632 5' -66.7 NC_001347.2 + 84321 0.66 0.582596
Target:  5'- gGAGGCGgCGGgcuuuuuugUCCCGGgggUGGGUGGa -3'
miRNA:   3'- gCUCCGCgGCU---------GGGGCCg--ACCCGCCg -5'
1632 5' -66.7 NC_001347.2 + 165620 0.67 0.528448
Target:  5'- aGAccGGCaGCCGcCCgCCGGC-GGGCaGCu -3'
miRNA:   3'- gCU--CCG-CGGCuGG-GGCCGaCCCGcCG- -5'
1632 5' -66.7 NC_001347.2 + 128710 0.67 0.519593
Target:  5'- --cGGCGCCGGugacccgccCCCCGGCa--GCGGUc -3'
miRNA:   3'- gcuCCGCGGCU---------GGGGCCGaccCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 30595 0.68 0.459446
Target:  5'- -cGGGCggcuuccugcgGCCGGCCgCGGUgccGGCGGCu -3'
miRNA:   3'- gcUCCG-----------CGGCUGGgGCCGac-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 76616 0.68 0.459446
Target:  5'- uCGcAGGCGgCGGCUgCGGCcGcGGCGGa -3'
miRNA:   3'- -GC-UCCGCgGCUGGgGCCGaC-CCGCCg -5'
1632 5' -66.7 NC_001347.2 + 1414 0.68 0.459446
Target:  5'- aCGAGGUggaccccgcaGCCGACCCgacGUUGGGCGa- -3'
miRNA:   3'- -GCUCCG----------CGGCUGGGgc-CGACCCGCcg -5'
1632 5' -66.7 NC_001347.2 + 66765 0.67 0.473726
Target:  5'- -cGGGC-CCGACCCCgacguccgcccgacGGUgGuGGCGGCg -3'
miRNA:   3'- gcUCCGcGGCUGGGG--------------CCGaC-CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 156765 0.67 0.47288
Target:  5'- gGAGGaguuGCUGGCUCUGGCgggagaagggaaGGCGGCa -3'
miRNA:   3'- gCUCCg---CGGCUGGGGCCGac----------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 1707 0.68 0.467819
Target:  5'- gCGAcGGCGCuCGgacgggagcuGCgCCGGCggUGGGcCGGCa -3'
miRNA:   3'- -GCU-CCGCG-GC----------UGgGGCCG--ACCC-GCCG- -5'
1632 5' -66.7 NC_001347.2 + 39520 0.67 0.47627
Target:  5'- gGGGGCGCggCGACaugCCGuugcGCUGGGCcaugGGCg -3'
miRNA:   3'- gCUCCGCG--GCUGg--GGC----CGACCCG----CCG- -5'
1632 5' -66.7 NC_001347.2 + 36382 0.67 0.484796
Target:  5'- aGGGGCaugCGGCCUuagCGGCUcGGGCuGGCg -3'
miRNA:   3'- gCUCCGcg-GCUGGG---GCCGA-CCCG-CCG- -5'
1632 5' -66.7 NC_001347.2 + 13921 0.67 0.502062
Target:  5'- aCGGGGCGUCGgagaguauaaACUggggCgGGCgcgGGGUGGCg -3'
miRNA:   3'- -GCUCCGCGGC----------UGG----GgCCGa--CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 81886 0.67 0.502062
Target:  5'- aGAGGU-CCGGCCCCaGGUaGucgcguagcGGCGGCu -3'
miRNA:   3'- gCUCCGcGGCUGGGG-CCGaC---------CCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 136041 0.67 0.517828
Target:  5'- --cGGUGCCcggcccacGGCCCCGGauggugcuccaGGGCGGUg -3'
miRNA:   3'- gcuCCGCGG--------CUGGGGCCga---------CCCGCCG- -5'
1632 5' -66.7 NC_001347.2 + 194019 0.67 0.519593
Target:  5'- gCGGcuGGCGCgCGACCUCaggGGCUucgugcgcgugGGGCuGGCg -3'
miRNA:   3'- -GCU--CCGCG-GCUGGGG---CCGA-----------CCCG-CCG- -5'
1632 5' -66.7 NC_001347.2 + 198902 0.66 0.573472
Target:  5'- aGAGcGCGCCG-CgCgaGGUguagUGGGCGGUa -3'
miRNA:   3'- gCUC-CGCGGCuGgGg-CCG----ACCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.