miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 1284 0.66 0.675306
Target:  5'- cCGGgGAUGCCCGGcucgcucgaugagugAuAGGAucucagcaCGGCGCUc -3'
miRNA:   3'- -GCCgCUGCGGGCC---------------UuUCCU--------GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 39122 0.66 0.674253
Target:  5'- gCGGUGACccggagaGCCUGaaguauaaagcucgcGAGGGcGACGACGCUg -3'
miRNA:   3'- -GCCGCUG-------CGGGC---------------CUUUC-CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 42309 0.66 0.660529
Target:  5'- uCGGCGACGaucgcgacgaCCGuc-GGGACGAgAUCg -3'
miRNA:   3'- -GCCGCUGCg---------GGCcuuUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 46704 0.66 0.660529
Target:  5'- cCGGCGACGUCUaccgcgacgaguGGuc-GGGCGAgCACa -3'
miRNA:   3'- -GCCGCUGCGGG------------CCuuuCCUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 57951 0.66 0.660529
Target:  5'- aGGCGACGaaCCGGGcaacguccuGGGCGuccucCGCCg -3'
miRNA:   3'- gCCGCUGCg-GGCCUuu-------CCUGCu----GUGG- -5'
16320 3' -57.6 NC_004084.1 + 37410 0.66 0.649942
Target:  5'- uGGCcgaugaugGACGCuuGGAucucgauAGcGGCGGCACUc -3'
miRNA:   3'- gCCG--------CUGCGggCCUu------UC-CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 46636 0.66 0.649942
Target:  5'- aGGCuuccgGugGCCCGacgaggaucGAGAGGACuACAUCc -3'
miRNA:   3'- gCCG-----CugCGGGC---------CUUUCCUGcUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 9500 0.66 0.649942
Target:  5'- cCGGCGcCGaCCGGAAGu--CGugGCCg -3'
miRNA:   3'- -GCCGCuGCgGGCCUUUccuGCugUGG- -5'
16320 3' -57.6 NC_004084.1 + 29989 0.66 0.649942
Target:  5'- cCGGCGuCGaCCUGGucgcuGGuGACGACGUCa -3'
miRNA:   3'- -GCCGCuGC-GGGCCuu---UC-CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 28638 0.66 0.649942
Target:  5'- gGGagaaCGGCuUCCGcGAGGGGACGACcuACCg -3'
miRNA:   3'- gCC----GCUGcGGGC-CUUUCCUGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 1767 0.66 0.639341
Target:  5'- cCGaGCGGgGCCUGGcGAGGugGucguucugaGCCa -3'
miRNA:   3'- -GC-CGCUgCGGGCCuUUCCugCug-------UGG- -5'
16320 3' -57.6 NC_004084.1 + 18819 0.66 0.63828
Target:  5'- uCGGCGacgccagacaagcGCGCCCGGGAccucgucGACGAgCugCu -3'
miRNA:   3'- -GCCGC-------------UGCGGGCCUUuc-----CUGCU-GugG- -5'
16320 3' -57.6 NC_004084.1 + 1865 0.66 0.632976
Target:  5'- aCGGaCGACGucgccuCCUGGAcugccacgccaagucGGGGAUGGgGCCg -3'
miRNA:   3'- -GCC-GCUGC------GGGCCU---------------UUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 30284 0.66 0.632976
Target:  5'- uCGGCGugG-UCGGGAAGGccgcgaaauuuacuuACGgauGCGCCu -3'
miRNA:   3'- -GCCGCugCgGGCCUUUCC---------------UGC---UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 4947 0.66 0.628733
Target:  5'- uGGaUGACGUCCGccGGGaGACGACgACCc -3'
miRNA:   3'- gCC-GCUGCGGGCcuUUC-CUGCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 40329 0.66 0.628733
Target:  5'- --cUGACGUCCGaGAucguccucgAAGGGCGGCACa -3'
miRNA:   3'- gccGCUGCGGGC-CU---------UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 10208 0.66 0.628733
Target:  5'- aGGCGAuCGCCUGGAggaguuccuuGAGuACGAgCGCg -3'
miRNA:   3'- gCCGCU-GCGGGCCU----------UUCcUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 29343 0.67 0.618128
Target:  5'- gCGGCGACGacgcCCCcGAgcGGGCGGuCGCg -3'
miRNA:   3'- -GCCGCUGC----GGGcCUuuCCUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 11760 0.67 0.607534
Target:  5'- aGGCGACuGaggugaCCGaGGAGGaacugagcgauGGCGACACCa -3'
miRNA:   3'- gCCGCUG-Cg-----GGC-CUUUC-----------CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 11667 0.67 0.607534
Target:  5'- uCGGCGACGacuaCGGcGAGGacaGCGACGuCUa -3'
miRNA:   3'- -GCCGCUGCgg--GCCuUUCC---UGCUGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.