miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 48711 0.67 0.607534
Target:  5'- cCGGCGACGUCCuuucGAgcagcAAGGAC--CACCu -3'
miRNA:   3'- -GCCGCUGCGGGc---CU-----UUCCUGcuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 25879 0.68 0.524134
Target:  5'- aGGCG-CGCU---GAAGGGCGACGCg -3'
miRNA:   3'- gCCGCuGCGGgccUUUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 30242 0.68 0.524134
Target:  5'- gCGGCGACGUCgaacaGGccGAGGACGGacuauuccaGCCg -3'
miRNA:   3'- -GCCGCUGCGGg----CCu-UUCCUGCUg--------UGG- -5'
16320 3' -57.6 NC_004084.1 + 1018 0.68 0.524134
Target:  5'- cCGGCGACGUCgaCGcGAucGGGGGCG-CGCUc -3'
miRNA:   3'- -GCCGCUGCGG--GC-CU--UUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 9687 0.68 0.534362
Target:  5'- gGGUGGCcCgCCGGAGAccgcggugaguuGGcCGACGCCg -3'
miRNA:   3'- gCCGCUGcG-GGCCUUU------------CCuGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 29067 0.68 0.513983
Target:  5'- -cGCGAcCGCCCGcucGGGGGCGucguCGCCg -3'
miRNA:   3'- gcCGCU-GCGGGCcu-UUCCUGCu---GUGG- -5'
16320 3' -57.6 NC_004084.1 + 10258 0.68 0.518034
Target:  5'- gCGGuCGGCGUCCGGAucacgauguucGAGGGCauccgguacaucucgGGCaACCa -3'
miRNA:   3'- -GCC-GCUGCGGGCCU-----------UUCCUG---------------CUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 378 0.68 0.513983
Target:  5'- -cGCGA-GCCCGG---GGACGuCGCCg -3'
miRNA:   3'- gcCGCUgCGGGCCuuuCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 14604 0.68 0.534362
Target:  5'- aGGUGACuGCCacaaaCGGuggGAGGAaaUGGCACCa -3'
miRNA:   3'- gCCGCUG-CGG-----GCCu--UUCCU--GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 6439 0.68 0.544658
Target:  5'- uGGUG-CGCCCGaGGAGGGugcUGGCgGCCu -3'
miRNA:   3'- gCCGCuGCGGGC-CUUUCCu--GCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 1242 0.68 0.54776
Target:  5'- gGGCGaucGCGCCCaucuccucauccuGGACGACAUCa -3'
miRNA:   3'- gCCGC---UGCGGGccuuu--------CCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 36943 0.68 0.555019
Target:  5'- aGGCGAucgcCGCCCuc-GAGGGCGA-GCCg -3'
miRNA:   3'- gCCGCU----GCGGGccuUUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 49074 0.68 0.555019
Target:  5'- uCGGCGcgaaGCCCGGc-GGGAUcaaGCACCc -3'
miRNA:   3'- -GCCGCug--CGGGCCuuUCCUGc--UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 7429 0.68 0.524134
Target:  5'- gGGCGAUGCCgaCGGu--GG-CGAgACCu -3'
miRNA:   3'- gCCGCUGCGG--GCCuuuCCuGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 45521 0.68 0.503912
Target:  5'- uCGGCcacuccgagGACGCCgGGAuGGGuuGGCGCg -3'
miRNA:   3'- -GCCG---------CUGCGGgCCUuUCCugCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 938 0.68 0.503912
Target:  5'- uGGUGACGCucCCGGAGgAGGuCGcGgGCCa -3'
miRNA:   3'- gCCGCUGCG--GGCCUU-UCCuGC-UgUGG- -5'
16320 3' -57.6 NC_004084.1 + 22484 0.68 0.524134
Target:  5'- cCGGCGACGCCgGGGAcaugcuCGugAaCCg -3'
miRNA:   3'- -GCCGCUGCGGgCCUUuccu--GCugU-GG- -5'
16320 3' -57.6 NC_004084.1 + 41628 0.69 0.484036
Target:  5'- aGGCGACgGUCCGGGAcaucGACGucgaguucaaACGCCg -3'
miRNA:   3'- gCCGCUG-CGGGCCUUuc--CUGC----------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 437 0.69 0.474239
Target:  5'- aCGGCGAC-CUCGaGAcggcGGAgGACGCCc -3'
miRNA:   3'- -GCCGCUGcGGGC-CUuu--CCUgCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 19497 0.69 0.474239
Target:  5'- aGGCGAgcaggaGCCCGGGA---GCGaACGCCg -3'
miRNA:   3'- gCCGCUg-----CGGGCCUUuccUGC-UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.