Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16320 | 3' | -57.6 | NC_004084.1 | + | 43180 | 0.71 | 0.349074 |
Target: 5'- aCGGaGuCGCCCGaGGAGguGGACGAUGCCc -3' miRNA: 3'- -GCCgCuGCGGGC-CUUU--CCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 44229 | 0.71 | 0.356381 |
Target: 5'- uGGcCGACGgCUGGGAgcucgucuacgacGGGACGACcgGCCu -3' miRNA: 3'- gCC-GCUGCgGGCCUU-------------UCCUGCUG--UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 43958 | 0.71 | 0.364625 |
Target: 5'- aGGCG--GCCUGGGAGGGcgagggaACGACGCUc -3' miRNA: 3'- gCCGCugCGGGCCUUUCC-------UGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 43806 | 0.71 | 0.364625 |
Target: 5'- gCGGCGaggaGCGCCgGGAGauggaucauucguGGGcgcgagacauccGCGACGCCg -3' miRNA: 3'- -GCCGC----UGCGGgCCUU-------------UCC------------UGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 17168 | 0.71 | 0.391008 |
Target: 5'- cCGGCGACGUCgaaGGcGAGGGaGGCACa -3' miRNA: 3'- -GCCGCUGCGGg--CCuUUCCUgCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 35945 | 0.72 | 0.333222 |
Target: 5'- cCGGCGuCGCCgGGGucGGcggcCGugACCa -3' miRNA: 3'- -GCCGCuGCGGgCCUuuCCu---GCugUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 40901 | 0.72 | 0.333222 |
Target: 5'- gCGGCGACG-CUGGAGgccuGGACGAggagcagcUACCg -3' miRNA: 3'- -GCCGCUGCgGGCCUUu---CCUGCU--------GUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 55971 | 0.72 | 0.317904 |
Target: 5'- aCGGCGACGC--GGAGGGGcUGAuCGCCg -3' miRNA: 3'- -GCCGCUGCGggCCUUUCCuGCU-GUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 31449 | 0.72 | 0.317904 |
Target: 5'- gGGUGACuGCCCuc-GAGGACGGCAgCa -3' miRNA: 3'- gCCGCUG-CGGGccuUUCCUGCUGUgG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 51405 | 0.73 | 0.261967 |
Target: 5'- gCGGcCGACGCCgucgaGGccuucGAGGGCGACACg -3' miRNA: 3'- -GCC-GCUGCGGg----CCu----UUCCUGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 35788 | 0.73 | 0.275157 |
Target: 5'- cCGGaGGCG-CCGGGAAGGACG-CGCUc -3' miRNA: 3'- -GCCgCUGCgGGCCUUUCCUGCuGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 29363 | 0.73 | 0.296644 |
Target: 5'- uGGuCGACGCCCGGGAucccgcgucccuccuGGAaggUGAUGCCg -3' miRNA: 3'- gCC-GCUGCGGGCCUUu--------------CCU---GCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 21218 | 0.73 | 0.295931 |
Target: 5'- uCGGCGGCGaagCCGGu---GACGACAUCg -3' miRNA: 3'- -GCCGCUGCg--GGCCuuucCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 42791 | 0.73 | 0.261967 |
Target: 5'- aCGGUGACGagUGGAAGuucaacccGGugGACGCCg -3' miRNA: 3'- -GCCGCUGCggGCCUUU--------CCugCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 30424 | 0.73 | 0.261967 |
Target: 5'- gGGCGGCGa-CGGAagcgauggcGAGGACGACGuCCc -3' miRNA: 3'- gCCGCUGCggGCCU---------UUCCUGCUGU-GG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 54083 | 0.73 | 0.268497 |
Target: 5'- uCGGCGucgguggagaACGCuCCGGAcucGACGACGCCc -3' miRNA: 3'- -GCCGC----------UGCG-GGCCUuucCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 41760 | 0.74 | 0.230079 |
Target: 5'- cCGGCGACGaggaccuCCCGGAcgacgucgacgacGAGGGCGuCACg -3' miRNA: 3'- -GCCGCUGC-------GGGCCU-------------UUCCUGCuGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 52591 | 0.75 | 0.203613 |
Target: 5'- gCGGCGugGUCCGGugggucGAGGcaguCGACACg -3' miRNA: 3'- -GCCGCugCGGGCCu-----UUCCu---GCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 17662 | 0.76 | 0.193387 |
Target: 5'- gGGCGACaCCCGaGcacAGGGCGACGCUg -3' miRNA: 3'- gCCGCUGcGGGC-Cuu-UCCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 57002 | 0.77 | 0.144865 |
Target: 5'- aCGGCGACG-CCGaGAAuGG-CGACGCCg -3' miRNA: 3'- -GCCGCUGCgGGC-CUUuCCuGCUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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