Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16320 | 3' | -57.6 | NC_004084.1 | + | 938 | 0.68 | 0.503912 |
Target: 5'- uGGUGACGCucCCGGAGgAGGuCGcGgGCCa -3' miRNA: 3'- gCCGCUGCG--GGCCUU-UCCuGC-UgUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 23074 | 0.67 | 0.596961 |
Target: 5'- cCGGCGACGCgaCG---AGGugGACGUCg -3' miRNA: 3'- -GCCGCUGCGg-GCcuuUCCugCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 35886 | 0.67 | 0.585362 |
Target: 5'- uCGGuCGucuuCGgCCGGAggcgaucgucgucGAGGAUGACGCg -3' miRNA: 3'- -GCC-GCu---GCgGGCCU-------------UUCCUGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 13947 | 0.67 | 0.607534 |
Target: 5'- aGGCGAgccucaaacuCGCuCCGGAAcGGuCGAUGCa -3' miRNA: 3'- gCCGCU----------GCG-GGCCUUuCCuGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 11045 | 0.67 | 0.575904 |
Target: 5'- cCGuCGACGaCgCGGAcgaAGGGGCGGcCGCCg -3' miRNA: 3'- -GCcGCUGC-GgGCCU---UUCCUGCU-GUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 8347 | 0.67 | 0.574855 |
Target: 5'- cCGGCGuuuuCGagagcaaucgccaCCCGGuGAGGGACGAgCAUCu -3' miRNA: 3'- -GCCGCu---GC-------------GGGCC-UUUCCUGCU-GUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 49687 | 0.67 | 0.565437 |
Target: 5'- cCGGCGACaUCCac-GAGGGUGACGCCg -3' miRNA: 3'- -GCCGCUGcGGGccuUUCCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 7512 | 0.67 | 0.585362 |
Target: 5'- aCGGgGagacuGCGCCCGagugggugcagccGAuccAGGACGGCAUCg -3' miRNA: 3'- -GCCgC-----UGCGGGC-------------CUu--UCCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 39718 | 0.67 | 0.565437 |
Target: 5'- aCGGCGACGaCgCCGucGAcGAGGAUGACGa- -3' miRNA: 3'- -GCCGCUGC-G-GGC--CU-UUCCUGCUGUgg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 30574 | 0.67 | 0.568572 |
Target: 5'- gCGGCGACGgucggcgaaCCGGAgcgggguGAGGugGcgcgggaucuucucgACGCCg -3' miRNA: 3'- -GCCGCUGCg--------GGCCU-------UUCCugC---------------UGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 47432 | 0.67 | 0.580104 |
Target: 5'- uCGGCGAcaagacgauccgauuCGaCCCGGAGAuGGuCGAUgucgACCg -3' miRNA: 3'- -GCCGCU---------------GC-GGGCCUUU-CCuGCUG----UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 8964 | 0.67 | 0.586415 |
Target: 5'- gCGGCGACGaagaCGGc-GGGACGAgGgCa -3' miRNA: 3'- -GCCGCUGCgg--GCCuuUCCUGCUgUgG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 25479 | 0.67 | 0.586415 |
Target: 5'- gGGCGGCGUCa-GAAGGuGCG-CGCCg -3' miRNA: 3'- gCCGCUGCGGgcCUUUCcUGCuGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 8239 | 0.67 | 0.586415 |
Target: 5'- gGGCGACGUC--GAGAcGAuCGACGCCg -3' miRNA: 3'- gCCGCUGCGGgcCUUUcCU-GCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 9698 | 0.67 | 0.595905 |
Target: 5'- aGGUGGuccuugcUGCUC-GAAAGGACGuCGCCg -3' miRNA: 3'- gCCGCU-------GCGGGcCUUUCCUGCuGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 9857 | 0.67 | 0.596961 |
Target: 5'- gGGCGGCucacgcgggaGCCCGGcgGAAGaGuCGGCgACCg -3' miRNA: 3'- gCCGCUG----------CGGGCC--UUUC-CuGCUG-UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 47662 | 0.67 | 0.596961 |
Target: 5'- uCGGCGACGCCCccacuGG-CGA-GCCg -3' miRNA: 3'- -GCCGCUGCGGGccuuuCCuGCUgUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 11760 | 0.67 | 0.607534 |
Target: 5'- aGGCGACuGaggugaCCGaGGAGGaacugagcgauGGCGACACCa -3' miRNA: 3'- gCCGCUG-Cg-----GGC-CUUUC-----------CUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 11667 | 0.67 | 0.607534 |
Target: 5'- uCGGCGACGacuaCGGcGAGGacaGCGACGuCUa -3' miRNA: 3'- -GCCGCUGCgg--GCCuUUCC---UGCUGU-GG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 22118 | 0.67 | 0.607534 |
Target: 5'- uGGCGAaucgcaucccCGgCUGGGAAGcGAUGACugACCg -3' miRNA: 3'- gCCGCU----------GCgGGCCUUUC-CUGCUG--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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