miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 30860 0.71 0.3572
Target:  5'- uGGCGAcCGUCCGGGAGGcccuugugcGCGGcCACCg -3'
miRNA:   3'- gCCGCU-GCGGGCCUUUCc--------UGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 1551 0.71 0.359663
Target:  5'- aGGCGACggccgucgagccggaGCCCGcGAAcggguccAGGACGACgucGCCc -3'
miRNA:   3'- gCCGCUG---------------CGGGC-CUU-------UCCUGCUG---UGG- -5'
16320 3' -57.6 NC_004084.1 + 43806 0.71 0.364625
Target:  5'- gCGGCGaggaGCGCCgGGAGauggaucauucguGGGcgcgagacauccGCGACGCCg -3'
miRNA:   3'- -GCCGC----UGCGGgCCUU-------------UCC------------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 43958 0.71 0.364625
Target:  5'- aGGCG--GCCUGGGAGGGcgagggaACGACGCUc -3'
miRNA:   3'- gCCGCugCGGGCCUUUCC-------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 17168 0.71 0.391008
Target:  5'- cCGGCGACGUCgaaGGcGAGGGaGGCACa -3'
miRNA:   3'- -GCCGCUGCGGg--CCuUUCCUgCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 17270 0.7 0.399781
Target:  5'- uCGGCGAUGCCCucgguGGAGgcGGuGGCGGCGgUg -3'
miRNA:   3'- -GCCGCUGCGGG-----CCUU--UC-CUGCUGUgG- -5'
16320 3' -57.6 NC_004084.1 + 53317 0.7 0.408678
Target:  5'- cCGGCGAUcgcggGCUCGGuucacgucuucGAGGugGACugCg -3'
miRNA:   3'- -GCCGCUG-----CGGGCCu----------UUCCugCUGugG- -5'
16320 3' -57.6 NC_004084.1 + 58041 0.7 0.408678
Target:  5'- gCGGCGACGucCCCGGGcuc-GCGGCACa -3'
miRNA:   3'- -GCCGCUGC--GGGCCUuuccUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 49038 0.7 0.436095
Target:  5'- uGGgGAUGCCCGaGGAGGGCaAC-CCg -3'
miRNA:   3'- gCCgCUGCGGGCcUUUCCUGcUGuGG- -5'
16320 3' -57.6 NC_004084.1 + 1807 0.7 0.436095
Target:  5'- cCGGCGAacuCGCcgaCCGGc---GACGACGCCg -3'
miRNA:   3'- -GCCGCU---GCG---GGCCuuucCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 49031 0.7 0.436095
Target:  5'- --aCGACGuCCUGGAcgggacGGGACGGCAUCg -3'
miRNA:   3'- gccGCUGC-GGGCCUu-----UCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 19574 0.69 0.445467
Target:  5'- aGGaCGACGuCCCaGAccacGAGGACGACGa- -3'
miRNA:   3'- gCC-GCUGC-GGGcCU----UUCCUGCUGUgg -5'
16320 3' -57.6 NC_004084.1 + 39354 0.69 0.454951
Target:  5'- --cCGAaccUGCCCGuucguGAGGACGACGCCg -3'
miRNA:   3'- gccGCU---GCGGGCcu---UUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 55832 0.69 0.464543
Target:  5'- uCGGCGuCGUCCGGGAugccgucaACGACGCg -3'
miRNA:   3'- -GCCGCuGCGGGCCUUucc-----UGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 29540 0.69 0.47132
Target:  5'- cCGGUGACGCgCCGGAgcGuaagcaggccguugAGGGCcauCGCCg -3'
miRNA:   3'- -GCCGCUGCG-GGCCU--U--------------UCCUGcu-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 29010 0.69 0.473265
Target:  5'- -cGCGAUGCa-GGAgcccaucGAGGGCGGCAUCa -3'
miRNA:   3'- gcCGCUGCGggCCU-------UUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 19497 0.69 0.474239
Target:  5'- aGGCGAgcaggaGCCCGGGA---GCGaACGCCg -3'
miRNA:   3'- gCCGCUg-----CGGGCCUUuccUGC-UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 437 0.69 0.474239
Target:  5'- aCGGCGAC-CUCGaGAcggcGGAgGACGCCc -3'
miRNA:   3'- -GCCGCUGcGGGC-CUuu--CCUgCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 7592 0.69 0.483052
Target:  5'- aGGCagguugugccGGCGCCCGcGAAcggguccAGGACGAUuCCc -3'
miRNA:   3'- gCCG----------CUGCGGGC-CUU-------UCCUGCUGuGG- -5'
16320 3' -57.6 NC_004084.1 + 41628 0.69 0.484036
Target:  5'- aGGCGACgGUCCGGGAcaucGACGucgaguucaaACGCCg -3'
miRNA:   3'- gCCGCUG-CGGGCCUUuc--CUGC----------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.