miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 36943 0.68 0.555019
Target:  5'- aGGCGAucgcCGCCCuc-GAGGGCGA-GCCg -3'
miRNA:   3'- gCCGCU----GCGGGccuUUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 39619 0.67 0.564392
Target:  5'- cCGGCGACGUCCucgacGAGucGaucguacGCGACGCCg -3'
miRNA:   3'- -GCCGCUGCGGGc----CUUucC-------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 49687 0.67 0.565437
Target:  5'- cCGGCGACaUCCac-GAGGGUGACGCCg -3'
miRNA:   3'- -GCCGCUGcGGGccuUUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 39718 0.67 0.565437
Target:  5'- aCGGCGACGaCgCCGucGAcGAGGAUGACGa- -3'
miRNA:   3'- -GCCGCUGC-G-GGC--CU-UUCCUGCUGUgg -5'
16320 3' -57.6 NC_004084.1 + 41403 0.67 0.565437
Target:  5'- gGGCGAggaGgCCGGGAAGGuaGCGACcgAUCu -3'
miRNA:   3'- gCCGCUg--CgGGCCUUUCC--UGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 30574 0.67 0.568572
Target:  5'- gCGGCGACGgucggcgaaCCGGAgcgggguGAGGugGcgcgggaucuucucgACGCCg -3'
miRNA:   3'- -GCCGCUGCg--------GGCCU-------UUCCugC---------------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 8347 0.67 0.574855
Target:  5'- cCGGCGuuuuCGagagcaaucgccaCCCGGuGAGGGACGAgCAUCu -3'
miRNA:   3'- -GCCGCu---GC-------------GGGCC-UUUCCUGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 11045 0.67 0.575904
Target:  5'- cCGuCGACGaCgCGGAcgaAGGGGCGGcCGCCg -3'
miRNA:   3'- -GCcGCUGC-GgGCCU---UUCCUGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 47432 0.67 0.580104
Target:  5'- uCGGCGAcaagacgauccgauuCGaCCCGGAGAuGGuCGAUgucgACCg -3'
miRNA:   3'- -GCCGCU---------------GC-GGGCCUUU-CCuGCUG----UGG- -5'
16320 3' -57.6 NC_004084.1 + 35886 0.67 0.585362
Target:  5'- uCGGuCGucuuCGgCCGGAggcgaucgucgucGAGGAUGACGCg -3'
miRNA:   3'- -GCC-GCu---GCgGGCCU-------------UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 7512 0.67 0.585362
Target:  5'- aCGGgGagacuGCGCCCGagugggugcagccGAuccAGGACGGCAUCg -3'
miRNA:   3'- -GCCgC-----UGCGGGC-------------CUu--UCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 8964 0.67 0.586415
Target:  5'- gCGGCGACGaagaCGGc-GGGACGAgGgCa -3'
miRNA:   3'- -GCCGCUGCgg--GCCuuUCCUGCUgUgG- -5'
16320 3' -57.6 NC_004084.1 + 8239 0.67 0.586415
Target:  5'- gGGCGACGUC--GAGAcGAuCGACGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUcCU-GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 25479 0.67 0.586415
Target:  5'- gGGCGGCGUCa-GAAGGuGCG-CGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUCcUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 9698 0.67 0.595905
Target:  5'- aGGUGGuccuugcUGCUC-GAAAGGACGuCGCCg -3'
miRNA:   3'- gCCGCU-------GCGGGcCUUUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 9857 0.67 0.596961
Target:  5'- gGGCGGCucacgcgggaGCCCGGcgGAAGaGuCGGCgACCg -3'
miRNA:   3'- gCCGCUG----------CGGGCC--UUUC-CuGCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 23074 0.67 0.596961
Target:  5'- cCGGCGACGCgaCG---AGGugGACGUCg -3'
miRNA:   3'- -GCCGCUGCGg-GCcuuUCCugCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 47662 0.67 0.596961
Target:  5'- uCGGCGACGCCCccacuGG-CGA-GCCg -3'
miRNA:   3'- -GCCGCUGCGGGccuuuCCuGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 11667 0.67 0.607534
Target:  5'- uCGGCGACGacuaCGGcGAGGacaGCGACGuCUa -3'
miRNA:   3'- -GCCGCUGCgg--GCCuUUCC---UGCUGU-GG- -5'
16320 3' -57.6 NC_004084.1 + 22118 0.67 0.607534
Target:  5'- uGGCGAaucgcaucccCGgCUGGGAAGcGAUGACugACCg -3'
miRNA:   3'- gCCGCU----------GCgGGCCUUUC-CUGCUG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.