Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16320 | 3' | -57.6 | NC_004084.1 | + | 11667 | 0.67 | 0.607534 |
Target: 5'- uCGGCGACGacuaCGGcGAGGacaGCGACGuCUa -3' miRNA: 3'- -GCCGCUGCgg--GCCuUUCC---UGCUGU-GG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 18784 | 0.67 | 0.607534 |
Target: 5'- uCGGCGuCGCguacgaucgacUCGucGAGGACGuCGCCg -3' miRNA: 3'- -GCCGCuGCG-----------GGCcuUUCCUGCuGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 48711 | 0.67 | 0.607534 |
Target: 5'- cCGGCGACGUCCuuucGAgcagcAAGGAC--CACCu -3' miRNA: 3'- -GCCGCUGCGGGc---CU-----UUCCUGcuGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 13947 | 0.67 | 0.607534 |
Target: 5'- aGGCGAgccucaaacuCGCuCCGGAAcGGuCGAUGCa -3' miRNA: 3'- gCCGCU----------GCG-GGCCUUuCCuGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 29343 | 0.67 | 0.618128 |
Target: 5'- gCGGCGACGacgcCCCcGAgcGGGCGGuCGCg -3' miRNA: 3'- -GCCGCUGC----GGGcCUuuCCUGCU-GUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 10208 | 0.66 | 0.628733 |
Target: 5'- aGGCGAuCGCCUGGAggaguuccuuGAGuACGAgCGCg -3' miRNA: 3'- gCCGCU-GCGGGCCU----------UUCcUGCU-GUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 4947 | 0.66 | 0.628733 |
Target: 5'- uGGaUGACGUCCGccGGGaGACGACgACCc -3' miRNA: 3'- gCC-GCUGCGGGCcuUUC-CUGCUG-UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 40329 | 0.66 | 0.628733 |
Target: 5'- --cUGACGUCCGaGAucguccucgAAGGGCGGCACa -3' miRNA: 3'- gccGCUGCGGGC-CU---------UUCCUGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 30284 | 0.66 | 0.632976 |
Target: 5'- uCGGCGugG-UCGGGAAGGccgcgaaauuuacuuACGgauGCGCCu -3' miRNA: 3'- -GCCGCugCgGGCCUUUCC---------------UGC---UGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1865 | 0.66 | 0.632976 |
Target: 5'- aCGGaCGACGucgccuCCUGGAcugccacgccaagucGGGGAUGGgGCCg -3' miRNA: 3'- -GCC-GCUGC------GGGCCU---------------UUCCUGCUgUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 18819 | 0.66 | 0.63828 |
Target: 5'- uCGGCGacgccagacaagcGCGCCCGGGAccucgucGACGAgCugCu -3' miRNA: 3'- -GCCGC-------------UGCGGGCCUUuc-----CUGCU-GugG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 1767 | 0.66 | 0.639341 |
Target: 5'- cCGaGCGGgGCCUGGcGAGGugGucguucugaGCCa -3' miRNA: 3'- -GC-CGCUgCGGGCCuUUCCugCug-------UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 29989 | 0.66 | 0.649942 |
Target: 5'- cCGGCGuCGaCCUGGucgcuGGuGACGACGUCa -3' miRNA: 3'- -GCCGCuGC-GGGCCuu---UC-CUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 28638 | 0.66 | 0.649942 |
Target: 5'- gGGagaaCGGCuUCCGcGAGGGGACGACcuACCg -3' miRNA: 3'- gCC----GCUGcGGGC-CUUUCCUGCUG--UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 9500 | 0.66 | 0.649942 |
Target: 5'- cCGGCGcCGaCCGGAAGu--CGugGCCg -3' miRNA: 3'- -GCCGCuGCgGGCCUUUccuGCugUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 46636 | 0.66 | 0.649942 |
Target: 5'- aGGCuuccgGugGCCCGacgaggaucGAGAGGACuACAUCc -3' miRNA: 3'- gCCG-----CugCGGGC---------CUUUCCUGcUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 37410 | 0.66 | 0.649942 |
Target: 5'- uGGCcgaugaugGACGCuuGGAucucgauAGcGGCGGCACUc -3' miRNA: 3'- gCCG--------CUGCGggCCUu------UC-CUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 46704 | 0.66 | 0.660529 |
Target: 5'- cCGGCGACGUCUaccgcgacgaguGGuc-GGGCGAgCACa -3' miRNA: 3'- -GCCGCUGCGGG------------CCuuuCCUGCU-GUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 57951 | 0.66 | 0.660529 |
Target: 5'- aGGCGACGaaCCGGGcaacguccuGGGCGuccucCGCCg -3' miRNA: 3'- gCCGCUGCg-GGCCUuu-------CCUGCu----GUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 42309 | 0.66 | 0.660529 |
Target: 5'- uCGGCGACGaucgcgacgaCCGuc-GGGACGAgAUCg -3' miRNA: 3'- -GCCGCUGCg---------GGCcuuUCCUGCUgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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