miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 378 0.68 0.513983
Target:  5'- -cGCGA-GCCCGG---GGACGuCGCCg -3'
miRNA:   3'- gcCGCUgCGGGCCuuuCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 437 0.69 0.474239
Target:  5'- aCGGCGAC-CUCGaGAcggcGGAgGACGCCc -3'
miRNA:   3'- -GCCGCUGcGGGC-CUuu--CCUgCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 938 0.68 0.503912
Target:  5'- uGGUGACGCucCCGGAGgAGGuCGcGgGCCa -3'
miRNA:   3'- gCCGCUGCG--GGCCUU-UCCuGC-UgUGG- -5'
16320 3' -57.6 NC_004084.1 + 1018 0.68 0.524134
Target:  5'- cCGGCGACGUCgaCGcGAucGGGGGCG-CGCUc -3'
miRNA:   3'- -GCCGCUGCGG--GC-CU--UUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 1242 0.68 0.54776
Target:  5'- gGGCGaucGCGCCCaucuccucauccuGGACGACAUCa -3'
miRNA:   3'- gCCGC---UGCGGGccuuu--------CCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 1284 0.66 0.675306
Target:  5'- cCGGgGAUGCCCGGcucgcucgaugagugAuAGGAucucagcaCGGCGCUc -3'
miRNA:   3'- -GCCgCUGCGGGCC---------------UuUCCU--------GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 1551 0.71 0.359663
Target:  5'- aGGCGACggccgucgagccggaGCCCGcGAAcggguccAGGACGACgucGCCc -3'
miRNA:   3'- gCCGCUG---------------CGGGC-CUU-------UCCUGCUG---UGG- -5'
16320 3' -57.6 NC_004084.1 + 1767 0.66 0.639341
Target:  5'- cCGaGCGGgGCCUGGcGAGGugGucguucugaGCCa -3'
miRNA:   3'- -GC-CGCUgCGGGCCuUUCCugCug-------UGG- -5'
16320 3' -57.6 NC_004084.1 + 1807 0.7 0.436095
Target:  5'- cCGGCGAacuCGCcgaCCGGc---GACGACGCCg -3'
miRNA:   3'- -GCCGCU---GCG---GGCCuuucCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 1865 0.66 0.632976
Target:  5'- aCGGaCGACGucgccuCCUGGAcugccacgccaagucGGGGAUGGgGCCg -3'
miRNA:   3'- -GCC-GCUGC------GGGCCU---------------UUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 4947 0.66 0.628733
Target:  5'- uGGaUGACGUCCGccGGGaGACGACgACCc -3'
miRNA:   3'- gCC-GCUGCGGGCcuUUC-CUGCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 6439 0.68 0.544658
Target:  5'- uGGUG-CGCCCGaGGAGGGugcUGGCgGCCu -3'
miRNA:   3'- gCCGCuGCGGGC-CUUUCCu--GCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 6716 0.71 0.3572
Target:  5'- cCGGCGAugucCGUCCGGuacGGGaACGACGuCCc -3'
miRNA:   3'- -GCCGCU----GCGGGCCuu-UCC-UGCUGU-GG- -5'
16320 3' -57.6 NC_004084.1 + 7429 0.68 0.524134
Target:  5'- gGGCGAUGCCgaCGGu--GG-CGAgACCu -3'
miRNA:   3'- gCCGCUGCGG--GCCuuuCCuGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 7512 0.67 0.585362
Target:  5'- aCGGgGagacuGCGCCCGagugggugcagccGAuccAGGACGGCAUCg -3'
miRNA:   3'- -GCCgC-----UGCGGGC-------------CUu--UCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 7592 0.69 0.483052
Target:  5'- aGGCagguugugccGGCGCCCGcGAAcggguccAGGACGAUuCCc -3'
miRNA:   3'- gCCG----------CUGCGGGC-CUU-------UCCUGCUGuGG- -5'
16320 3' -57.6 NC_004084.1 + 8239 0.67 0.586415
Target:  5'- gGGCGACGUC--GAGAcGAuCGACGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUcCU-GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 8347 0.67 0.574855
Target:  5'- cCGGCGuuuuCGagagcaaucgccaCCCGGuGAGGGACGAgCAUCu -3'
miRNA:   3'- -GCCGCu---GC-------------GGGCC-UUUCCUGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 8654 0.69 0.493928
Target:  5'- -cGCGAUGCCCgaaguacgggGGAGAuGuGACGACGCa -3'
miRNA:   3'- gcCGCUGCGGG----------CCUUU-C-CUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 8964 0.67 0.586415
Target:  5'- gCGGCGACGaagaCGGc-GGGACGAgGgCa -3'
miRNA:   3'- -GCCGCUGCgg--GCCuuUCCUGCUgUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.