miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 21218 0.73 0.295931
Target:  5'- uCGGCGGCGaagCCGGu---GACGACAUCg -3'
miRNA:   3'- -GCCGCUGCg--GGCCuuucCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 21486 0.69 0.493928
Target:  5'- gCGGCGAuCGCCuCGGuugcgucguAGG-CGuCACCg -3'
miRNA:   3'- -GCCGCU-GCGG-GCCuu-------UCCuGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 22118 0.67 0.607534
Target:  5'- uGGCGAaucgcaucccCGgCUGGGAAGcGAUGACugACCg -3'
miRNA:   3'- gCCGCU----------GCgGGCCUUUC-CUGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 22484 0.68 0.524134
Target:  5'- cCGGCGACGCCgGGGAcaugcuCGugAaCCg -3'
miRNA:   3'- -GCCGCUGCGGgCCUUuccu--GCugU-GG- -5'
16320 3' -57.6 NC_004084.1 + 23074 0.67 0.596961
Target:  5'- cCGGCGACGCgaCG---AGGugGACGUCg -3'
miRNA:   3'- -GCCGCUGCGg-GCcuuUCCugCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 23709 1.11 0.000616
Target:  5'- cCGGCGACGCCCGGAAAGGACGACACCc -3'
miRNA:   3'- -GCCGCUGCGGGCCUUUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 25479 0.67 0.586415
Target:  5'- gGGCGGCGUCa-GAAGGuGCG-CGCCg -3'
miRNA:   3'- gCCGCUGCGGgcCUUUCcUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 25879 0.68 0.524134
Target:  5'- aGGCG-CGCU---GAAGGGCGACGCg -3'
miRNA:   3'- gCCGCuGCGGgccUUUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 28638 0.66 0.649942
Target:  5'- gGGagaaCGGCuUCCGcGAGGGGACGACcuACCg -3'
miRNA:   3'- gCC----GCUGcGGGC-CUUUCCUGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 29010 0.69 0.473265
Target:  5'- -cGCGAUGCa-GGAgcccaucGAGGGCGGCAUCa -3'
miRNA:   3'- gcCGCUGCGggCCU-------UUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 29067 0.68 0.513983
Target:  5'- -cGCGAcCGCCCGcucGGGGGCGucguCGCCg -3'
miRNA:   3'- gcCGCU-GCGGGCcu-UUCCUGCu---GUGG- -5'
16320 3' -57.6 NC_004084.1 + 29343 0.67 0.618128
Target:  5'- gCGGCGACGacgcCCCcGAgcGGGCGGuCGCg -3'
miRNA:   3'- -GCCGCUGC----GGGcCUuuCCUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 29363 0.73 0.296644
Target:  5'- uGGuCGACGCCCGGGAucccgcgucccuccuGGAaggUGAUGCCg -3'
miRNA:   3'- gCC-GCUGCGGGCCUUu--------------CCU---GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 29540 0.69 0.47132
Target:  5'- cCGGUGACGCgCCGGAgcGuaagcaggccguugAGGGCcauCGCCg -3'
miRNA:   3'- -GCCGCUGCG-GGCCU--U--------------UCCUGcu-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 29989 0.66 0.649942
Target:  5'- cCGGCGuCGaCCUGGucgcuGGuGACGACGUCa -3'
miRNA:   3'- -GCCGCuGC-GGGCCuu---UC-CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 30242 0.68 0.524134
Target:  5'- gCGGCGACGUCgaacaGGccGAGGACGGacuauuccaGCCg -3'
miRNA:   3'- -GCCGCUGCGGg----CCu-UUCCUGCUg--------UGG- -5'
16320 3' -57.6 NC_004084.1 + 30284 0.66 0.632976
Target:  5'- uCGGCGugG-UCGGGAAGGccgcgaaauuuacuuACGgauGCGCCu -3'
miRNA:   3'- -GCCGCugCgGGCCUUUCC---------------UGC---UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 30424 0.73 0.261967
Target:  5'- gGGCGGCGa-CGGAagcgauggcGAGGACGACGuCCc -3'
miRNA:   3'- gCCGCUGCggGCCU---------UUCCUGCUGU-GG- -5'
16320 3' -57.6 NC_004084.1 + 30574 0.67 0.568572
Target:  5'- gCGGCGACGgucggcgaaCCGGAgcgggguGAGGugGcgcgggaucuucucgACGCCg -3'
miRNA:   3'- -GCCGCUGCg--------GGCCU-------UUCCugC---------------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 30860 0.71 0.3572
Target:  5'- uGGCGAcCGUCCGGGAGGcccuugugcGCGGcCACCg -3'
miRNA:   3'- gCCGCU-GCGGGCCUUUCc--------UGCU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.