Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16320 | 3' | -57.6 | NC_004084.1 | + | 44229 | 0.71 | 0.356381 |
Target: 5'- uGGcCGACGgCUGGGAgcucgucuacgacGGGACGACcgGCCu -3' miRNA: 3'- gCC-GCUGCgGGCCUU-------------UCCUGCUG--UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 45521 | 0.68 | 0.503912 |
Target: 5'- uCGGCcacuccgagGACGCCgGGAuGGGuuGGCGCg -3' miRNA: 3'- -GCCG---------CUGCGGgCCUuUCCugCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 46636 | 0.66 | 0.649942 |
Target: 5'- aGGCuuccgGugGCCCGacgaggaucGAGAGGACuACAUCc -3' miRNA: 3'- gCCG-----CugCGGGC---------CUUUCCUGcUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 46704 | 0.66 | 0.660529 |
Target: 5'- cCGGCGACGUCUaccgcgacgaguGGuc-GGGCGAgCACa -3' miRNA: 3'- -GCCGCUGCGGG------------CCuuuCCUGCU-GUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 47432 | 0.67 | 0.580104 |
Target: 5'- uCGGCGAcaagacgauccgauuCGaCCCGGAGAuGGuCGAUgucgACCg -3' miRNA: 3'- -GCCGCU---------------GC-GGGCCUUU-CCuGCUG----UGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 47662 | 0.67 | 0.596961 |
Target: 5'- uCGGCGACGCCCccacuGG-CGA-GCCg -3' miRNA: 3'- -GCCGCUGCGGGccuuuCCuGCUgUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 48711 | 0.67 | 0.607534 |
Target: 5'- cCGGCGACGUCCuuucGAgcagcAAGGAC--CACCu -3' miRNA: 3'- -GCCGCUGCGGGc---CU-----UUCCUGcuGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 49031 | 0.7 | 0.436095 |
Target: 5'- --aCGACGuCCUGGAcgggacGGGACGGCAUCg -3' miRNA: 3'- gccGCUGC-GGGCCUu-----UCCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 49038 | 0.7 | 0.436095 |
Target: 5'- uGGgGAUGCCCGaGGAGGGCaAC-CCg -3' miRNA: 3'- gCCgCUGCGGGCcUUUCCUGcUGuGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 49074 | 0.68 | 0.555019 |
Target: 5'- uCGGCGcgaaGCCCGGc-GGGAUcaaGCACCc -3' miRNA: 3'- -GCCGCug--CGGGCCuuUCCUGc--UGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 49079 | 0.69 | 0.484036 |
Target: 5'- aCGuGCGACgGUCgGGAGAGGucucGCGugACUg -3' miRNA: 3'- -GC-CGCUG-CGGgCCUUUCC----UGCugUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 49687 | 0.67 | 0.565437 |
Target: 5'- cCGGCGACaUCCac-GAGGGUGACGCCg -3' miRNA: 3'- -GCCGCUGcGGGccuUUCCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 51405 | 0.73 | 0.261967 |
Target: 5'- gCGGcCGACGCCgucgaGGccuucGAGGGCGACACg -3' miRNA: 3'- -GCC-GCUGCGGg----CCu----UUCCUGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 52591 | 0.75 | 0.203613 |
Target: 5'- gCGGCGugGUCCGGugggucGAGGcaguCGACACg -3' miRNA: 3'- -GCCGCugCGGGCCu-----UUCCu---GCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 53261 | 0.78 | 0.133702 |
Target: 5'- aCGGCGACGagaUCGGGccGGGCGACGuCCu -3' miRNA: 3'- -GCCGCUGCg--GGCCUuuCCUGCUGU-GG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 53317 | 0.7 | 0.408678 |
Target: 5'- cCGGCGAUcgcggGCUCGGuucacgucuucGAGGugGACugCg -3' miRNA: 3'- -GCCGCUG-----CGGGCCu----------UUCCugCUGugG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 54083 | 0.73 | 0.268497 |
Target: 5'- uCGGCGucgguggagaACGCuCCGGAcucGACGACGCCc -3' miRNA: 3'- -GCCGC----------UGCG-GGCCUuucCUGCUGUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 55832 | 0.69 | 0.464543 |
Target: 5'- uCGGCGuCGUCCGGGAugccgucaACGACGCg -3' miRNA: 3'- -GCCGCuGCGGGCCUUucc-----UGCUGUGg -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 55971 | 0.72 | 0.317904 |
Target: 5'- aCGGCGACGC--GGAGGGGcUGAuCGCCg -3' miRNA: 3'- -GCCGCUGCGggCCUUUCCuGCU-GUGG- -5' |
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16320 | 3' | -57.6 | NC_004084.1 | + | 57002 | 0.77 | 0.144865 |
Target: 5'- aCGGCGACG-CCGaGAAuGG-CGACGCCg -3' miRNA: 3'- -GCCGCUGCgGGC-CUUuCCuGCUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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