miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 58041 0.7 0.408678
Target:  5'- gCGGCGACGucCCCGGGcuc-GCGGCACa -3'
miRNA:   3'- -GCCGCUGC--GGGCCUuuccUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 57951 0.66 0.660529
Target:  5'- aGGCGACGaaCCGGGcaacguccuGGGCGuccucCGCCg -3'
miRNA:   3'- gCCGCUGCg-GGCCUuu-------CCUGCu----GUGG- -5'
16320 3' -57.6 NC_004084.1 + 57002 0.77 0.144865
Target:  5'- aCGGCGACG-CCGaGAAuGG-CGACGCCg -3'
miRNA:   3'- -GCCGCUGCgGGC-CUUuCCuGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 55971 0.72 0.317904
Target:  5'- aCGGCGACGC--GGAGGGGcUGAuCGCCg -3'
miRNA:   3'- -GCCGCUGCGggCCUUUCCuGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 55832 0.69 0.464543
Target:  5'- uCGGCGuCGUCCGGGAugccgucaACGACGCg -3'
miRNA:   3'- -GCCGCuGCGGGCCUUucc-----UGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 54083 0.73 0.268497
Target:  5'- uCGGCGucgguggagaACGCuCCGGAcucGACGACGCCc -3'
miRNA:   3'- -GCCGC----------UGCG-GGCCUuucCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 53317 0.7 0.408678
Target:  5'- cCGGCGAUcgcggGCUCGGuucacgucuucGAGGugGACugCg -3'
miRNA:   3'- -GCCGCUG-----CGGGCCu----------UUCCugCUGugG- -5'
16320 3' -57.6 NC_004084.1 + 53261 0.78 0.133702
Target:  5'- aCGGCGACGagaUCGGGccGGGCGACGuCCu -3'
miRNA:   3'- -GCCGCUGCg--GGCCUuuCCUGCUGU-GG- -5'
16320 3' -57.6 NC_004084.1 + 52591 0.75 0.203613
Target:  5'- gCGGCGugGUCCGGugggucGAGGcaguCGACACg -3'
miRNA:   3'- -GCCGCugCGGGCCu-----UUCCu---GCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 51405 0.73 0.261967
Target:  5'- gCGGcCGACGCCgucgaGGccuucGAGGGCGACACg -3'
miRNA:   3'- -GCC-GCUGCGGg----CCu----UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 49687 0.67 0.565437
Target:  5'- cCGGCGACaUCCac-GAGGGUGACGCCg -3'
miRNA:   3'- -GCCGCUGcGGGccuUUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 49079 0.69 0.484036
Target:  5'- aCGuGCGACgGUCgGGAGAGGucucGCGugACUg -3'
miRNA:   3'- -GC-CGCUG-CGGgCCUUUCC----UGCugUGG- -5'
16320 3' -57.6 NC_004084.1 + 49074 0.68 0.555019
Target:  5'- uCGGCGcgaaGCCCGGc-GGGAUcaaGCACCc -3'
miRNA:   3'- -GCCGCug--CGGGCCuuUCCUGc--UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 49038 0.7 0.436095
Target:  5'- uGGgGAUGCCCGaGGAGGGCaAC-CCg -3'
miRNA:   3'- gCCgCUGCGGGCcUUUCCUGcUGuGG- -5'
16320 3' -57.6 NC_004084.1 + 49031 0.7 0.436095
Target:  5'- --aCGACGuCCUGGAcgggacGGGACGGCAUCg -3'
miRNA:   3'- gccGCUGC-GGGCCUu-----UCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 48711 0.67 0.607534
Target:  5'- cCGGCGACGUCCuuucGAgcagcAAGGAC--CACCu -3'
miRNA:   3'- -GCCGCUGCGGGc---CU-----UUCCUGcuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 47662 0.67 0.596961
Target:  5'- uCGGCGACGCCCccacuGG-CGA-GCCg -3'
miRNA:   3'- -GCCGCUGCGGGccuuuCCuGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 47432 0.67 0.580104
Target:  5'- uCGGCGAcaagacgauccgauuCGaCCCGGAGAuGGuCGAUgucgACCg -3'
miRNA:   3'- -GCCGCU---------------GC-GGGCCUUU-CCuGCUG----UGG- -5'
16320 3' -57.6 NC_004084.1 + 46704 0.66 0.660529
Target:  5'- cCGGCGACGUCUaccgcgacgaguGGuc-GGGCGAgCACa -3'
miRNA:   3'- -GCCGCUGCGGG------------CCuuuCCUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 46636 0.66 0.649942
Target:  5'- aGGCuuccgGugGCCCGacgaggaucGAGAGGACuACAUCc -3'
miRNA:   3'- gCCG-----CugCGGGC---------CUUUCCUGcUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.