miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 45521 0.68 0.503912
Target:  5'- uCGGCcacuccgagGACGCCgGGAuGGGuuGGCGCg -3'
miRNA:   3'- -GCCG---------CUGCGGgCCUuUCCugCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 44229 0.71 0.356381
Target:  5'- uGGcCGACGgCUGGGAgcucgucuacgacGGGACGACcgGCCu -3'
miRNA:   3'- gCC-GCUGCgGGCCUU-------------UCCUGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 43958 0.71 0.364625
Target:  5'- aGGCG--GCCUGGGAGGGcgagggaACGACGCUc -3'
miRNA:   3'- gCCGCugCGGGCCUUUCC-------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 43806 0.71 0.364625
Target:  5'- gCGGCGaggaGCGCCgGGAGauggaucauucguGGGcgcgagacauccGCGACGCCg -3'
miRNA:   3'- -GCCGC----UGCGGgCCUU-------------UCC------------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 43180 0.71 0.349074
Target:  5'- aCGGaGuCGCCCGaGGAGguGGACGAUGCCc -3'
miRNA:   3'- -GCCgCuGCGGGC-CUUU--CCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 42791 0.73 0.261967
Target:  5'- aCGGUGACGagUGGAAGuucaacccGGugGACGCCg -3'
miRNA:   3'- -GCCGCUGCggGCCUUU--------CCugCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 42309 0.66 0.660529
Target:  5'- uCGGCGACGaucgcgacgaCCGuc-GGGACGAgAUCg -3'
miRNA:   3'- -GCCGCUGCg---------GGCcuuUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 41760 0.74 0.230079
Target:  5'- cCGGCGACGaggaccuCCCGGAcgacgucgacgacGAGGGCGuCACg -3'
miRNA:   3'- -GCCGCUGC-------GGGCCU-------------UUCCUGCuGUGg -5'
16320 3' -57.6 NC_004084.1 + 41628 0.69 0.484036
Target:  5'- aGGCGACgGUCCGGGAcaucGACGucgaguucaaACGCCg -3'
miRNA:   3'- gCCGCUG-CGGGCCUUuc--CUGC----------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 41403 0.67 0.565437
Target:  5'- gGGCGAggaGgCCGGGAAGGuaGCGACcgAUCu -3'
miRNA:   3'- gCCGCUg--CgGGCCUUUCC--UGCUG--UGG- -5'
16320 3' -57.6 NC_004084.1 + 40901 0.72 0.333222
Target:  5'- gCGGCGACG-CUGGAGgccuGGACGAggagcagcUACCg -3'
miRNA:   3'- -GCCGCUGCgGGCCUUu---CCUGCU--------GUGG- -5'
16320 3' -57.6 NC_004084.1 + 40329 0.66 0.628733
Target:  5'- --cUGACGUCCGaGAucguccucgAAGGGCGGCACa -3'
miRNA:   3'- gccGCUGCGGGC-CU---------UUCCUGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 39718 0.67 0.565437
Target:  5'- aCGGCGACGaCgCCGucGAcGAGGAUGACGa- -3'
miRNA:   3'- -GCCGCUGC-G-GGC--CU-UUCCUGCUGUgg -5'
16320 3' -57.6 NC_004084.1 + 39619 0.67 0.564392
Target:  5'- cCGGCGACGUCCucgacGAGucGaucguacGCGACGCCg -3'
miRNA:   3'- -GCCGCUGCGGGc----CUUucC-------UGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 39354 0.69 0.454951
Target:  5'- --cCGAaccUGCCCGuucguGAGGACGACGCCg -3'
miRNA:   3'- gccGCU---GCGGGCcu---UUCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 39122 0.66 0.674253
Target:  5'- gCGGUGACccggagaGCCUGaaguauaaagcucgcGAGGGcGACGACGCUg -3'
miRNA:   3'- -GCCGCUG-------CGGGC---------------CUUUC-CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 37410 0.66 0.649942
Target:  5'- uGGCcgaugaugGACGCuuGGAucucgauAGcGGCGGCACUc -3'
miRNA:   3'- gCCG--------CUGCGggCCUu------UC-CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 36943 0.68 0.555019
Target:  5'- aGGCGAucgcCGCCCuc-GAGGGCGA-GCCg -3'
miRNA:   3'- gCCGCU----GCGGGccuUUCCUGCUgUGG- -5'
16320 3' -57.6 NC_004084.1 + 35945 0.72 0.333222
Target:  5'- cCGGCGuCGCCgGGGucGGcggcCGugACCa -3'
miRNA:   3'- -GCCGCuGCGGgCCUuuCCu---GCugUGG- -5'
16320 3' -57.6 NC_004084.1 + 35886 0.67 0.585362
Target:  5'- uCGGuCGucuuCGgCCGGAggcgaucgucgucGAGGAUGACGCg -3'
miRNA:   3'- -GCC-GCu---GCgGGCCU-------------UUCCUGCUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.