miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16320 3' -57.6 NC_004084.1 + 21486 0.69 0.493928
Target:  5'- gCGGCGAuCGCCuCGGuugcgucguAGG-CGuCACCg -3'
miRNA:   3'- -GCCGCU-GCGG-GCCuu-------UCCuGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 21218 0.73 0.295931
Target:  5'- uCGGCGGCGaagCCGGu---GACGACAUCg -3'
miRNA:   3'- -GCCGCUGCg--GGCCuuucCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 19574 0.69 0.445467
Target:  5'- aGGaCGACGuCCCaGAccacGAGGACGACGa- -3'
miRNA:   3'- gCC-GCUGC-GGGcCU----UUCCUGCUGUgg -5'
16320 3' -57.6 NC_004084.1 + 19497 0.69 0.474239
Target:  5'- aGGCGAgcaggaGCCCGGGA---GCGaACGCCg -3'
miRNA:   3'- gCCGCUg-----CGGGCCUUuccUGC-UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 18819 0.66 0.63828
Target:  5'- uCGGCGacgccagacaagcGCGCCCGGGAccucgucGACGAgCugCu -3'
miRNA:   3'- -GCCGC-------------UGCGGGCCUUuc-----CUGCU-GugG- -5'
16320 3' -57.6 NC_004084.1 + 18784 0.67 0.607534
Target:  5'- uCGGCGuCGCguacgaucgacUCGucGAGGACGuCGCCg -3'
miRNA:   3'- -GCCGCuGCG-----------GGCcuUUCCUGCuGUGG- -5'
16320 3' -57.6 NC_004084.1 + 17662 0.76 0.193387
Target:  5'- gGGCGACaCCCGaGcacAGGGCGACGCUg -3'
miRNA:   3'- gCCGCUGcGGGC-Cuu-UCCUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 17270 0.7 0.399781
Target:  5'- uCGGCGAUGCCCucgguGGAGgcGGuGGCGGCGgUg -3'
miRNA:   3'- -GCCGCUGCGGG-----CCUU--UC-CUGCUGUgG- -5'
16320 3' -57.6 NC_004084.1 + 17168 0.71 0.391008
Target:  5'- cCGGCGACGUCgaaGGcGAGGGaGGCACa -3'
miRNA:   3'- -GCCGCUGCGGg--CCuUUCCUgCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 15753 0.69 0.493928
Target:  5'- --aUGACGCUCGG-GAGGACGucgucggacuGCGCCg -3'
miRNA:   3'- gccGCUGCGGGCCuUUCCUGC----------UGUGG- -5'
16320 3' -57.6 NC_004084.1 + 14604 0.68 0.534362
Target:  5'- aGGUGACuGCCacaaaCGGuggGAGGAaaUGGCACCa -3'
miRNA:   3'- gCCGCUG-CGG-----GCCu--UUCCU--GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 13947 0.67 0.607534
Target:  5'- aGGCGAgccucaaacuCGCuCCGGAAcGGuCGAUGCa -3'
miRNA:   3'- gCCGCU----------GCG-GGCCUUuCCuGCUGUGg -5'
16320 3' -57.6 NC_004084.1 + 12915 0.69 0.484036
Target:  5'- uGGcCGACcgGCCCGGccAGGuagacgcugauCGACGCCg -3'
miRNA:   3'- gCC-GCUG--CGGGCCuuUCCu----------GCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 11760 0.67 0.607534
Target:  5'- aGGCGACuGaggugaCCGaGGAGGaacugagcgauGGCGACACCa -3'
miRNA:   3'- gCCGCUG-Cg-----GGC-CUUUC-----------CUGCUGUGG- -5'
16320 3' -57.6 NC_004084.1 + 11667 0.67 0.607534
Target:  5'- uCGGCGACGacuaCGGcGAGGacaGCGACGuCUa -3'
miRNA:   3'- -GCCGCUGCgg--GCCuUUCC---UGCUGU-GG- -5'
16320 3' -57.6 NC_004084.1 + 11045 0.67 0.575904
Target:  5'- cCGuCGACGaCgCGGAcgaAGGGGCGGcCGCCg -3'
miRNA:   3'- -GCcGCUGC-GgGCCU---UUCCUGCU-GUGG- -5'
16320 3' -57.6 NC_004084.1 + 10258 0.68 0.518034
Target:  5'- gCGGuCGGCGUCCGGAucacgauguucGAGGGCauccgguacaucucgGGCaACCa -3'
miRNA:   3'- -GCC-GCUGCGGGCCU-----------UUCCUG---------------CUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 10208 0.66 0.628733
Target:  5'- aGGCGAuCGCCUGGAggaguuccuuGAGuACGAgCGCg -3'
miRNA:   3'- gCCGCU-GCGGGCCU----------UUCcUGCU-GUGg -5'
16320 3' -57.6 NC_004084.1 + 9857 0.67 0.596961
Target:  5'- gGGCGGCucacgcgggaGCCCGGcgGAAGaGuCGGCgACCg -3'
miRNA:   3'- gCCGCUG----------CGGGCC--UUUC-CuGCUG-UGG- -5'
16320 3' -57.6 NC_004084.1 + 9698 0.67 0.595905
Target:  5'- aGGUGGuccuugcUGCUC-GAAAGGACGuCGCCg -3'
miRNA:   3'- gCCGCU-------GCGGGcCUUUCCUGCuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.